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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E06
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch...   128   3e-30
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu...   126   1e-29
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c...   126   1e-29
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc...   120   9e-28
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu...   117   8e-27
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c...   100   2e-21
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c...    99   3e-21
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy...    98   5e-21
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    97   7e-21
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    97   7e-21
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu...    97   7e-21
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu...    97   1e-20
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c...    96   2e-20
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu...    95   4e-20
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c...    92   3e-19
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu...    73   2e-13
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    66   2e-11
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc...    65   3e-11
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc...    65   3e-11
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc...    58   7e-09
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu...    48   4e-06
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc...    44   7e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    41   8e-04
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc...    39   0.003
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc...    38   0.004
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc...    38   0.004
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc...    38   0.004
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc...    36   0.018
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc...    30   1.2  
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat...    27   8.3  
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat...    27   8.3  
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat...    27   8.3  

>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
           chloroplast / cyclophilin / rotamase / cyclosporin
           A-binding protein (ROC4) identical to peptidyl-prolyl
           cis-trans isomerase, chloroplast precursor, PPIase
           (cyclophilin, cyclosporin A-binding protein)
           [Arabidopsis thaliana] SWISS-PROT:P34791; identical to
           cDNA nuclear-encoded chloroplast stromal cyclophilin
           (ROC4) GI:405130
          Length = 260

 Score =  128 bits (309), Expect = 3e-30
 Identities = 65/122 (53%), Positives = 80/122 (65%)
 Frame = +1

Query: 289 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 468
           +A+ + + I    KVT+KV FD++IG +  G IV+GLFG+ VPKT ENF  L    +  G
Sbjct: 79  MAAEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG 138

Query: 469 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDT 648
           YKGS FHR+IK+FMIQ             SIYG +FEDENF LKH G G LSMANAG +T
Sbjct: 139 YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNT 198

Query: 649 NG 654
           NG
Sbjct: 199 NG 200


>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           (ROC7) similar to cyclophilin [Arabidopsis thaliana]
           gi|2443755|gb|AAB71401
          Length = 204

 Score =  126 bits (304), Expect = 1e-29
 Identities = 69/129 (53%), Positives = 82/129 (63%), Gaps = 7/129 (5%)
 Frame = +1

Query: 289 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 468
           I + KS E  K  ++THKV FD++I     G IV+GLFGKTVPKT ENF  L    +G G
Sbjct: 21  IQAKKSKENLK--EITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIG 78

Query: 469 -------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSM 627
                  YKGS FHR+I +FM+Q             SIYGE+F DENFKLKH G G+LSM
Sbjct: 79  KNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSM 138

Query: 628 ANAGKDTNG 654
           ANAG+DTNG
Sbjct: 139 ANAGQDTNG 147


>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
           cyclophilin (CYP5) / rotamase identical to cyclophilin
           [Arabidopsis thaliana] gi|2443755|gb|AAB71401
          Length = 201

 Score =  126 bits (304), Expect = 1e-29
 Identities = 69/129 (53%), Positives = 83/129 (64%), Gaps = 7/129 (5%)
 Frame = +1

Query: 289 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 468
           IAS ++ E  K  +VTHKV FD++I   + G +VIGLFGK VPKT ENF  L    +G G
Sbjct: 18  IASIQAKEDLK--EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVG 75

Query: 469 -------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSM 627
                  YKGSKFHR+I +FMIQ             SIYG++F DENFKLKH G G LSM
Sbjct: 76  KSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSM 135

Query: 628 ANAGKDTNG 654
           AN+G+DTNG
Sbjct: 136 ANSGEDTNG 144


>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 259

 Score =  120 bits (289), Expect = 9e-28
 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
 Frame = +1

Query: 328 KVTHKVSFDMKIGDDN---IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 498
           K+THKV FD+ +G+      G IVIGL+G  VP+T ENF  L    +G GYKGS FHRVI
Sbjct: 87  KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVI 146

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           ++FMIQ            +S+YG  F+DENFKL H G G LSMANAG +TNG
Sbjct: 147 RDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNG 198


>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to cyclophilin [Arabidopsis thaliana]
           gi|2443755|gb|AAB71401
          Length = 228

 Score =  117 bits (281), Expect = 8e-27
 Identities = 63/130 (48%), Positives = 79/130 (60%), Gaps = 8/130 (6%)
 Frame = +1

Query: 289 IASAKSDEIPKGPK-VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGE 465
           I  AK +++ +  + VTHKV FD++I     G I+IGLFG  VPKT ENF  L    +G 
Sbjct: 42  ILDAKLNQVGEDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGV 101

Query: 466 G-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLS 624
           G       +KGS FHR+I  FMIQ             SIYG++F DENFKLKH G G+LS
Sbjct: 102 GNMGKPLYFKGSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGFLS 161

Query: 625 MANAGKDTNG 654
           MAN+G D+NG
Sbjct: 162 MANSGPDSNG 171


>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
           cyclophilin (CYP2) / rotamase identical to cyclophilin
           [Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
           to peptidyl-prolyl cis-trans isomerase, PPIase
           (cyclophilin, cyclosporin A-binding protein)
           [Arabidopsis thaliana] SWISS-PROT:P34790
          Length = 174

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 56/112 (50%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 498
           KV FDM IG    G IV+ L+    PKT ENF  L    +G G       +KGS FHRVI
Sbjct: 6   KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
            NFM Q             SIYG +FEDENF+ KH G G LSMANAG +TNG
Sbjct: 66  PNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNG 117


>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
           cyclophilin / rotamase / cyclosporin A-binding protein
           (ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
           isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
           (Cyclosporin A-binding protein) {Arabidopsis thaliana}
          Length = 172

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 55/112 (49%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 498
           KV FDM I     G IV+ L+    P+T ENF  L    +G G       +KGSKFHRVI
Sbjct: 5   KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
            NFM Q             SIYG +FEDENF+ KH G G LSMANAG +TNG
Sbjct: 65  PNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNG 116


>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
           cytosolic / cyclophilin / rotamase (ROC3) identical to
           cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
          Length = 173

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 54/112 (48%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 498
           KV FDM +G  + G IV+ L+  T P+T ENF  L     G G       YKGS FHRVI
Sbjct: 6   KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVI 65

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
             FM Q             SIYG +F+DENF  KH G G LSMANAG +TNG
Sbjct: 66  PKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNG 117


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 56/117 (47%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
 Frame = +1

Query: 328 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 483
           K    V  D+ IG D +  IVI LF   VPKT ENF  L     G G        +KGS 
Sbjct: 4   KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63

Query: 484 FHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           FHRVIK FM Q             SIYG +F DENF+L H GAG LSMAN G +TNG
Sbjct: 64  FHRVIKGFMAQGGDFSNGNGTGGESIYGGKFSDENFRLDHDGAGVLSMANCGPNTNG 120


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 56/117 (47%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
 Frame = +1

Query: 328 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 483
           K    V  D+ IG D +  IVI LF   VPKT ENF  L     G G        +KGS 
Sbjct: 4   KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63

Query: 484 FHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           FHRVIK FM Q             SIYG +F DENF+L H GAG LSMAN G +TNG
Sbjct: 64  FHRVIKGFMAQGGDFSNGNGTGGESIYGGKFSDENFRLDHDGAGVLSMANCGPNTNG 120


>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase, PPIase
           (cyclophilin, cyclosporin A-binding protein)
           [Catharanthus roseus] SWISS-PROT:Q39613
          Length = 176

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 53/112 (47%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 498
           KV FD+ IG    G +V+ LF    P+T  NF  L     G G       YKGS FHR+I
Sbjct: 5   KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRII 64

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
             FM Q             SIYG +FEDENFKLKH G G LSMAN+G +TNG
Sbjct: 65  PGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNG 116


>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to cyclophilin [Arabidopsis thaliana]
           gi|2443755|gb|AAB71401
          Length = 224

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
 Frame = +1

Query: 328 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKF 486
           ++T++V  D+ I    +G IVIGL+G  VPKT ENF  L    +G+        YKG+ F
Sbjct: 44  EITNRVFLDVDIDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPF 103

Query: 487 HRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           HR+I  F+IQ             SIYG  F DENFK++H  AG ++MAN G D+NG
Sbjct: 104 HRIISGFVIQGGDIIHGDGKSSDSIYGGTFPDENFKIQHSHAGMVAMANTGPDSNG 159


>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
           cyclophilin-40 (CYP40) / rotamase identical to
           cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
           supporting cDNA gi|13442982|gb|AY026065.1|
          Length = 361

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 54/113 (47%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRV 495
           K   D+ IG +  G IVI L+   VPKT ENF  L    +G G        YKG++FHRV
Sbjct: 5   KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRV 64

Query: 496 IKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           IK FMIQ             SIYG +F+DENF+LKH   G LSMAN+G +TNG
Sbjct: 65  IKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNG 117


>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to cyclophilin [Homo sapiens]
           gi|3647230|gb|AAC60793
          Length = 199

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 55/118 (46%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
 Frame = +1

Query: 316 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQ---KPEGE--GYKGS 480
           P  PK    V FD+ IG    G I + LF    PKT ENF Q      +  G+  GYK  
Sbjct: 26  PPNPK-NPVVFFDVSIGGIPAGRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKEC 84

Query: 481 KFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           +FHRVIK+FM+Q             SIYG +FEDENF  KH G G LSMAN+G +TNG
Sbjct: 85  QFHRVIKDFMVQSGDFLKNDGSGCMSIYGHKFEDENFTAKHTGPGLLSMANSGPNTNG 142


>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
           cyclophilin (CYP1) / rotamase identical to cyclophilin
           (CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
           cis-trans isomerase, PPIase (cyclophilin, cyclosporin
           A-binding protein) [Catharanthus roseus]
           SWISS-PROT:Q39613
          Length = 172

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 498
           +V FDM +    IG I + LF  T P T ENF  L    +G G       +KGS FHRVI
Sbjct: 5   RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVI 64

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
             FM Q             SIYG +F+DENF  KH GAG LSMAN+G +TNG
Sbjct: 65  PGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNG 116


>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
           isomerase, cyclophilin-type
          Length = 164

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
 Frame = +1

Query: 367 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 546
           + ++G   + ++ K  P+T  NF +L+++     Y    FHR++K+F++Q          
Sbjct: 15  ETSMGPFTVEMYYKHSPRTCRNFLELSRRGY---YDNVLFHRIVKDFIVQGGDPTGTGRG 71

Query: 547 XXRSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNG 654
              SIYG +FEDE N +LKH GAG LSMANAG +TNG
Sbjct: 72  G-ESIYGSKFEDEINKELKHTGAGILSMANAGPNTNG 107


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
 Frame = +1

Query: 328 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 483
           K   +V  D+ I  D   T+V  LF +  PKT+ENF  L    +G G        YKGS 
Sbjct: 4   KKNPQVFMDVSIDGDPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSF 63

Query: 484 FHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           FHR++K    Q             SIY  +F DE+ KL+H   G LSM+ A +D  G
Sbjct: 64  FHRIMKGSSAQAGDFVNRNGTAGESIYAGKFPDESPKLRHEETGLLSMSIADRDKFG 120


>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 595

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 46/116 (39%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
 Frame = +1

Query: 310 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFH 489
           ++ K PK    V F    GD NI      L     P+  ENF  L ++     Y G  FH
Sbjct: 335 KVEKNPKKKGYVQFQTTHGDLNIE-----LHCDIAPRACENFITLCERGY---YNGVAFH 386

Query: 490 RVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNG 654
           R I+NFMIQ             SI+G+ F+DE N KL H G G +SMAN+G  TNG
Sbjct: 387 RSIRNFMIQGGDPTGTGKGG-ESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNG 441


>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 160

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = +1

Query: 373 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 552
           N+G I   +F   VPK+ ENF  L        Y G+ FHR IK FMIQ            
Sbjct: 8   NLGDIKCEIFCDEVPKSAENFLALCASGY---YDGTIFHRNIKGFMIQGGDPKGTGKGGT 64

Query: 553 RSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNG 654
            SI+G++F DE    LKH   G LSMAN+G +TNG
Sbjct: 65  -SIWGKKFNDEIRDSLKHNARGMLSMANSGPNTNG 98


>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to SP|P87051
           Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
           (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
           Pfam profiles PF00160: peptidyl-prolyl cis-trans
           isomerase cyclophilin-type, PF00400: WD domain G-beta
           repeat
          Length = 631

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 39/94 (41%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +1

Query: 376 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXR 555
           +G I + L+ +  PKT ENF    +      Y    FHRVI+ FMIQ            +
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGY---YDNHLFHRVIRGFMIQTGDPLGDGTGG-Q 539

Query: 556 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNG 654
           SI+G  FEDE  K L+H     LSMANAG +TNG
Sbjct: 540 SIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNG 573


>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase PPIase
           (cyclophilin, cyclosporin A-binding protein) [Tomato]
           SWISS-PROT:P21568
          Length = 232

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
 Frame = +1

Query: 340 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 498
           KV FD+ +     G IVI LF    P+T ENF  L     G G       YKGS F  ++
Sbjct: 5   KVFFDLTVDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIV 64

Query: 499 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHY-GAGWLSMANA 636
            + M                I+ E  +DE F L H  G G +SMA++
Sbjct: 65  PDLM----WCGGDIIFENEPIHSEELDDEYFILNHEDGPGIISMADS 107


>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 504

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
 Frame = +1

Query: 379 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQXXXXXXXXXXXXR 555
           G I + L+ K  PK+  NF QL      EGY   + FHRVI  F++Q             
Sbjct: 22  GPIDVELWPKEAPKSVRNFVQLCL----EGYFDNTIFHRVIPGFLVQGGDPTGSGTGGD- 76

Query: 556 SIYGERFEDE-NFKLKHYGAGWLSMANAGK-DTNG 654
           SIYG  F DE + +L+    G ++MANA   ++NG
Sbjct: 77  SIYGGVFADEFHSRLRFSHRGIVAMANASSPNSNG 111


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
 Frame = +1

Query: 373 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ---XXXXXXXXX 543
           ++G IVI L     P T +NF +L +    + Y G  FH V K+F  Q            
Sbjct: 8   SLGDIVIDLHSDKCPLTCKNFLKLCKI---KYYNGCLFHTVQKDFTAQTGDPTGTGAGGD 64

Query: 544 XXXRSIYGER---FEDE-NFKLKHYGAGWLSMANAGKDTN 651
              + +YGE+   ++DE +  LKH   G ++MA+ G++ N
Sbjct: 65  SIYKFLYGEQARFYKDEIHLDLKHSKTGTVAMASGGENLN 104


>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 317

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 334 THKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 510
           T K   D+ I  + IG I+IGL+G  VP  T  F  +     G  Y+   F +++  ++
Sbjct: 91  TKKAFIDVSIDGEPIGRIIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYV 149


>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 236

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 379 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 516
           G I + LF +  P+  + F  L QK   + +KG  F RVIKN+++Q
Sbjct: 90  GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132


>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 236

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 379 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 516
           G I + LF +  P+  + F  L QK   + +KG  F RVIKN+++Q
Sbjct: 90  GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132


>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 236

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 379 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 516
           G I + LF +  P+  + F  L QK   + +KG  F RVIKN+++Q
Sbjct: 90  GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132


>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 230

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 367 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 516
           D   G++ I LF  T P   + F +  Q    +GY KG  F RV+K+F+IQ
Sbjct: 83  DTGKGSVTIELFKDTAPNVVDQFMKFCQ----DGYFKGFLFSRVVKHFVIQ 129


>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 290

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 376 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRV 495
           +G +V+GL+G+ VP T   F ++        YK +  H++
Sbjct: 85  LGRVVLGLYGRHVPITVSTFKRMCTS-SSTSYKNTPVHKI 123


>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 307 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 483
           +++P      H +  D  +G  N     I L   K VP++   F  L   PEG      K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428

Query: 484 FHRV 495
           F R+
Sbjct: 429 FPRI 432


>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 307 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 483
           +++P      H +  D  +G  N     I L   K VP++   F  L   PEG      K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428

Query: 484 FHRV 495
           F R+
Sbjct: 429 FPRI 432


>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 307 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 483
           +++P      H +  D  +G  N     I L   K VP++   F  L   PEG      K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428

Query: 484 FHRV 495
           F R+
Sbjct: 429 FPRI 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,697
Number of Sequences: 28952
Number of extensions: 258794
Number of successful extensions: 531
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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