Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E03
         (611 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    30   5.6  
AF283342-1|AAL38107.1|  881|Homo sapiens candidate tumor suppres...    29   9.8  
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    29   9.8  
AC068287-1|AAY24318.1|  223|Homo sapiens unknown protein.              29   9.8  

>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -2

Query: 463 FSXDRSVFHFLAFRFRFVCFNVCDFVWIINEPVFIRLLATVHL-----FHQIYCSIIVFL 299
           +S  R   H   F + +VC  VC  + +    V+I +   +H+      H+     I   
Sbjct: 154 YSYTRICIHICIFIYTYVCMCVCSCIHVYT-CVYIHIYIGMHICVYSYMHRYTYVYIHIY 212

Query: 298 LQVGVL*HIHLHKCHFNM 245
           + + +  HIH+H  +F++
Sbjct: 213 ICIHMYTHIHIHTHNFSL 230


>AF283342-1|AAL38107.1|  881|Homo sapiens candidate tumor suppressor
           protein protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 317 TINLVKQMHGSQQSDEDWLVDDPYEITHI 403
           TIN+++  H  QQ   DWL  + Y + H+
Sbjct: 275 TINILQSFHNVQQMAIDWLTRNLYFVDHV 303


>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
           receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 317 TINLVKQMHGSQQSDEDWLVDDPYEITHI 403
           TIN+++  H  QQ   DWL  + Y + H+
Sbjct: 275 TINILQSFHNVQQMAIDWLTRNLYFVDHV 303


>AC068287-1|AAY24318.1|  223|Homo sapiens unknown protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 317 TINLVKQMHGSQQSDEDWLVDDPYEITHI 403
           TIN+++  H  QQ   DWL  + Y + H+
Sbjct: 160 TINILQSFHNVQQMAIDWLTRNLYFVDHV 188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,820,250
Number of Sequences: 237096
Number of extensions: 1229112
Number of successful extensions: 1377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)