Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E02
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 105 7e-24
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 41 1e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 31 0.100
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 29 0.70
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 26 3.7
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 6.5
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 8.7
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 8.7
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 105 bits (251), Expect = 7e-24
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Frame = +2
Query: 122 TLYIVKGMCILDYEGNRILAKYY--------DKDVLPTTKEQKAFEKNLFNKTHRANAEI 277
TLY V ILD G RI KYY + V + KE+K FEK LF KT + +I
Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKTQNDI 63
Query: 278 IMLDGLTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLD 457
+ DG V + +D+ FY++G ENE++L L ++ +++ LL + ++R L+EN D
Sbjct: 64 LTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYD 123
Query: 458 AVMLAFDEICDGGVILDADPTSIVSR 535
+++ DE D GVIL+ +P I +R
Sbjct: 124 QLVIVVDETIDDGVILETEPALIAAR 149
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/138 (18%), Positives = 63/138 (45%)
Frame = +2
Query: 131 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTCVYK 310
++ G+ I + +G+ ++ K + D+ + E F + T + I+ + T +Y
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTE--IFRVAILTNTDYRHP-IVSIGSSTYIYT 57
Query: 311 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICD 490
+ DL+ + + N +I+ L +L + ++ + E V +N+ + DE+ D
Sbjct: 58 KHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTV-KDNVSFIFELLDEMID 116
Query: 491 GGVILDADPTSIVSRAAL 544
G+I +P ++ ++
Sbjct: 117 YGIIQTTEPDALARSVSI 134
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 31.5 bits (68), Expect = 0.100
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Frame = +2
Query: 131 IVKGMCILDYEGNRILAKYYDK-DVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTCVY 307
+++ + I + G L+KYY D + + + + + + A + + VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 308 KSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEIC 487
+ L+F S +N+L + +++ E + N+ L+ N V DEI
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFF-GNVCELDLIFNFYKVSAILDEII 119
Query: 488 DGGVILDADPTSIVSR 535
GG I +++ S++ R
Sbjct: 120 LGGEIGESNKKSVLER 135
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 0.70
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +2
Query: 290 GLTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 469
G VY+ LFF +NELI+ V++ E + N+ L+ N +
Sbjct: 55 GEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYF-GNVCELDLIFNFEKAYY 113
Query: 470 AFDEICDGGVILDADPTSIVS 532
+E+ G + ++ T+++S
Sbjct: 114 VMEELLLAGELQESSKTNVLS 134
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 423 TWSGGFSWRTWMLLCLPSMRS 485
+WS G + W+ + LPSM S
Sbjct: 437 SWSNGIDYAKWISVALPSMLS 457
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 6.5
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +2
Query: 221 QKAFEKNLFNKTHRANAEIIMLDGLTCVYKS-------------NVDLFFYVMGSSHENE 361
Q F N+ K+H+ ++ L L V+K+ N +L F G +
Sbjct: 201 QDVFFTNMSMKSHKLGTSLLALHALNHVFKTRDRVLKNSARISQNPELEFRDQGYTRPKV 260
Query: 362 LILQSVLNALYESVSLLL 415
LIL N+ +E ++LL+
Sbjct: 261 LILLPTRNSAFEFINLLI 278
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 311 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVL 442
++V ++V + ELI++ + LYES + + R +L
Sbjct: 87 ADVPAIYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALL 130
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 191 DKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGL 295
D+D +P K + + +KN+ N + + A+++ GL
Sbjct: 55 DEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGL 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,042
Number of Sequences: 5004
Number of extensions: 47733
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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