Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E02
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 123 1e-28
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 122 2e-28
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 118 3e-27
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 33 0.18
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 32 0.41
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917... 30 1.2
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.9
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.8
09_02_0437 - 9399982-9401253 28 6.7
12_01_0661 + 5596739-5597047,5597125-5597703 27 8.8
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 27 8.8
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 123 bits (297), Expect = 1e-28
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Frame = +2
Query: 134 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTC 301
VK + +LD EG R+ KYY D PT + AFEK++F KT +A A EI+M DG
Sbjct: 7 VKNILLLDSEGKRVAVKYYTDD-WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIV 65
Query: 302 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDE 481
VYK DL F+V G ENELIL SVL ++V ++LR N+++R +ENLD ++L DE
Sbjct: 66 VYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDE 125
Query: 482 ICDGGVILDADPTSIVSRAA 541
I DGG++L+ + + I + +
Sbjct: 126 IVDGGIVLETEGSVIAEKVS 145
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 122 bits (294), Expect = 2e-28
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Frame = +2
Query: 134 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTH----RANAEIIMLDGLTC 301
VK + +LD EG R+ KYY D P+ ++AFEK++F KT R AEI+M D
Sbjct: 151 VKNILVLDSEGKRVAVKYYSDD-WPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFV 209
Query: 302 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDE 481
VYK DL F+V G ENELIL SVL E++ LLR + RR +ENLD + L DE
Sbjct: 210 VYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDE 269
Query: 482 ICDGGVILDADPTSIVSRAA 541
+ DGG++L+ D +I+ + +
Sbjct: 270 VVDGGIVLETDAKAILEKVS 289
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 118 bits (285), Expect = 3e-27
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Frame = +2
Query: 134 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTC 301
VK + +LD EG R+ KY+ D + + AFEK++F KT + NA EI + DG
Sbjct: 27 VKNILLLDSEGKRVAVKYFSDD-WSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIV 85
Query: 302 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDE 481
VYK DL F+V ENELI+ +VL +SV LLLR ++E+R +ENLD ++L DE
Sbjct: 86 VYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDE 145
Query: 482 ICDGGVILDADPTSIVSRAALRTED 556
I DGG+IL+ D +I + A D
Sbjct: 146 IVDGGIILETDANTIAGKVATNAVD 170
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 33.1 bits (72), Expect = 0.18
Identities = 29/136 (21%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Frame = +2
Query: 134 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKT-HRANAEIIMLD--GLTCV 304
++ + +++ +G +A+YY+ + E++A E + K R + + ++ V
Sbjct: 3 IRFVVMVNKQGQTRVAQYYEH---LSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVV 59
Query: 305 YKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEI 484
Y+ LFF V + ENEL + ++ L E++ N+ +M +L+ V +E+
Sbjct: 60 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEM 118
Query: 485 CDGGVILDADPTSIVS 532
G I++ +I++
Sbjct: 119 VMNGCIVETSKQNILA 134
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3
Query: 484 DLIEGKHNSIQVLHENPPLHVPSQQQTNRLVERIQY*LKD 365
D+ EG N + +LHE LH+ RLVE+I+Y LKD
Sbjct: 451 DMNEGYRNLLLMLHEKTNLHIQC-----RLVEQIRYLLKD 485
>07_03_0398 -
17690979-17690998,17691034-17691446,17691709-17691764,
17691922-17692054,17694244-17694403,17694862-17694955,
17695791-17695928,17696017-17696174,17696729-17696810,
17697055-17697151,17698703-17698824,17699833-17699910,
17700437-17700565,17701301-17701531
Length = 636
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 281 MLDGLTCVYKSNVDLFFYVMGSSHENELILQSVLN-ALYESVSLLLRRNMER 433
+LD C++ N+ F+V +S E +L+ ++N LY+ L R +E+
Sbjct: 108 LLDSFLCMW-FNIHTLFFVQLTSSETRKVLEHIINYVLYKMFQSLARERLEQ 158
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 374 SVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICD 490
++L E + L+ + M RR +EN++ +AF+ ICD
Sbjct: 306 TMLKGETEEIGKLVEKTMMRRFGVENVNDHFIAFNTICD 344
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 350 HENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICDGGVILDADPTSIV 529
H++ ILQ + +RR+ + V+ N+D ++ DE DG D I+
Sbjct: 611 HDSHTILQHSKEHCLMGIKGTVRRSTDGHVIHANIDTDIIIADEPTDGSTKKPEDMYRII 670
Query: 530 SRAAL 544
AL
Sbjct: 671 EHFAL 675
>09_02_0437 - 9399982-9401253
Length = 423
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = -1
Query: 543 SAARLTIDVGSAS------NITPPSQISSKASITASKFSMRTLRSM 424
SAA LTID GS S + PSQ SS S+ S+ S+ LRS+
Sbjct: 84 SAAALTIDAGSFSLAFLRDDDVLPSQWSSSWSVADSRGSLVLLRSL 129
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 431 RRVLMENLDAVMLAFDEICDGGVILDADPTSIVSRAALRTEDVPLGRAN 577
R+ M+NLD + + FD+I GV D T + + ++ T + P+ AN
Sbjct: 112 RKAGMKNLDHLRVMFDDIASNGV----DHTPVPATSSPSTLESPVNVAN 156
>03_01_0611 +
4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 409 AAEKEHGAEGSHGELGCC 462
AA E GAEGS G+LG C
Sbjct: 39 AAAAEDGAEGSDGDLGGC 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,884
Number of Sequences: 37544
Number of extensions: 307200
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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