Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E02
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3081| Best HMM Match : WHEP-TRS (HMM E-Value=8.8)                   28   6.8  
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               28   6.8  
SB_59191| Best HMM Match : efhand (HMM E-Value=1.6e-14)                27   9.0  
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.0  
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)            27   9.0  
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)               27   9.0  

>SB_3081| Best HMM Match : WHEP-TRS (HMM E-Value=8.8)
          Length = 324

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 19  NYCGIFNSLKX*YSEKLLTHTMVHTTXEGSLXRTHIVH 132
           N CG +NSL+    E LL  TM  T+    + +  + H
Sbjct: 173 NSCGTWNSLEVGVHENLLCDTMSETSDLSDIIKQRLCH 210


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +2

Query: 368 LQSVLNALYESVSLLLRRNMERRVLMENLDAVM--LAFDEICDGGVILDADPTS 523
           L  +LNAL   VSLL+R N     ++ N D+++  +  +EI D G+ L  + T+
Sbjct: 174 LAGILNALGSRVSLLIRYNN----VIRNFDSMLSGMLTEEIKDSGIDLCTNTTT 223


>SB_59191| Best HMM Match : efhand (HMM E-Value=1.6e-14)
          Length = 227

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 413 LRRNMERRVL--MENLDAVMLAFDEICDGGVILD 508
           L R +  +++   EN+    +AFD  CDG V LD
Sbjct: 36  LERKLRAKMVENFENIQRAFVAFDRRCDGFVTLD 69


>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 120  PHCTLSKGCAFWTMKETEFWPNITIKTSYPQLRSRRHL 233
            P C  + G    T+K+++F+ +  + +SY    +R HL
Sbjct: 950  PECLKAIGAQSGTLKDSQFFASSELSSSYRASNARLHL 987


>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
          Length = 779

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 413 LRRNMERRVL--MENLDAVMLAFDEICDGGVILD 508
           L R +  +++   EN+    +AFD  CDG V LD
Sbjct: 336 LERKLRAKMVENFENIQRAFVAFDRRCDGFVTLD 369


>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
          Length = 632

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 179 AKYYDKDVLPTTK-EQKAFEKNLFNKTHRANAEIIMLDGLTCVYKSNVDLFFYVMGSSHE 355
           AK  DK+V    +   +  EK L +K     +E   L  L C    NV + FY     HE
Sbjct: 90  AKEKDKEVEKAVEVNHEEVEKALLSKFDLIKSEERELQNLCCYIPFNVFMSFYKDYGRHE 149

Query: 356 NE---LILQSVLNALYESVS 406
           +     +LQ  L+ + ES S
Sbjct: 150 HGKQIALLQQELDEMEESHS 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,506,387
Number of Sequences: 59808
Number of extensions: 357069
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)