Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E02
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   186   1e-47
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    43   1e-04
Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    27   7.9  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  186 bits (452), Expect = 1e-47
 Identities = 79/147 (53%), Positives = 120/147 (81%), Gaps = 1/147 (0%)
 Frame = +2

Query: 122 TLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 298
           +LY +KG+ ILD +GNR+LAKYYD+    T KEQKAFEK+LF+KT R  +A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 299 CVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFD 478
           C+Y+SNVDL+FYV+GS+ ENEL L + L  LY++VS++LR+N+E++ L++++D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 479 EICDGGVILDADPTSIVSRAALRTEDV 559
           EICD G+I++ D  ++V R AL++++V
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEV 156


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = +2

Query: 134 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTCVYK 310
           + G+ ILD +GN ++++ Y  DV  +  E+  F   L  K    +A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 311 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLR--RNMERRVLMENLDAVMLAFDEI 484
             ++++   +   + N ++   VL+ALY+ V +     + +E   + +N   +   FDE+
Sbjct: 61  KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117

Query: 485 CDGG 496
            D G
Sbjct: 118 LDFG 121


>Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical
           protein Y57G11B.2 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 104 VLXFEPTLYIVKGMCILDYEGNRILAKYYD 193
           VL F  TL+I+ G  +  YEG+R + K  D
Sbjct: 4   VLIFTSTLFIISGSTLKCYEGSRGIVKGKD 33


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 513 SASNITPPSQISSKASITASKFSMRTLRSMFLLSSKLTDS 394
           S S IT P  +  +  +TAS  S +  +S+ ++ SKLT S
Sbjct: 517 SLSIITSPKALIGEKCLTASNKSSKIDKSLGMIDSKLTKS 556


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
 Frame = +2

Query: 293 LTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLA 472
           L  VYK    L+F      ++NELI   V++   E +        E  ++  N +     
Sbjct: 55  LKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIF-NFEKAYFI 113

Query: 473 FDEICDGGVILDADPTSIVSRAA----LRTEDVPLG 568
            DE    G I +     ++   A    ++ E+ P G
Sbjct: 114 LDEFLLAGEIQETSKKQVLKAIAAQDLIQEEETPQG 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,558
Number of Sequences: 27780
Number of extensions: 270813
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)