Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E02
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 241 FVQ*DSQSKCRNYNAGWSYLCL 306
           +VQ D   K    N GW  +CL
Sbjct: 383 YVQEDDDVKLVLLNFGWQMICL 404


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 10  LLVNYCGIFNSLK 48
           L++N+ GIFN +K
Sbjct: 295 LVINFSGIFNLVK 307


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 287 DGLTCVYKSNVD 322
           DGLT VY+  VD
Sbjct: 118 DGLTSVYRMQVD 129


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 10 LLVNYCGIFNSLK 48
          L++N+ GIFN +K
Sbjct: 45 LVINFSGIFNLVK 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,252
Number of Sequences: 438
Number of extensions: 3262
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)