Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D21
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329...   111   6e-25
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811...    92   3e-19
05_04_0192 + 18936955-18937168,18937385-18937498,18937588-189376...    90   1e-18
11_06_0082 + 19891184-19891332,19891349-19891445,19891584-198917...    67   1e-11
01_06_0299 + 28305447-28305729,28305892-28306104,28306915-283070...    46   4e-05
01_01_0130 + 1182504-1182817,1183024-1183152,1183582-1183716,118...    42   6e-04
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082...    38   0.007
07_03_1543 + 27582033-27582387,27583638-27583706,27583790-275838...    36   0.021
01_06_0361 + 28733493-28733523,28733743-28733870,28733982-287340...    36   0.037
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535...    31   0.61 
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866     31   0.81 
09_04_0654 - 19247051-19247305,19247466-19247534,19247618-192477...    29   4.3  
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750...    28   7.5  

>04_03_0669 +
           18531419-18531820,18532589-18532690,18532882-18532948,
           18533530-18533708,18533792-18534052,18535324-18535407,
           18535517-18535564,18535654-18535718,18536849-18536897,
           18538132-18538372,18539623-18539744,18539942-18540022,
           18540094-18540168,18540408-18540550,18540662-18540812,
           18540915-18541097
          Length = 750

 Score =  111 bits (266), Expect = 6e-25
 Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 11/154 (7%)
 Frame = +3

Query: 192 AFEWYGEYLELCGQLNKYIK---------TKDSILITGCGNSSLSADLYDVGYVNITNVD 344
           +FEWY E+ +L   L   +              IL+ GCG+S LS  LYD G+  +TNVD
Sbjct: 44  SFEWYAEWDDLRAPLLSLLHGGGGAEGGGKAPEILVPGCGSSVLSERLYDAGFRRVTNVD 103

Query: 345 VSEVVIKQM-KNVNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTLDALM-PDATEETNA 518
            S V++  M +   +AR  M++  MD T M F D +F+V+LDKG LDALM P+A  +   
Sbjct: 104 FSRVLVADMLRRHARARPEMRWRVMDMTDMQFTDGSFDVILDKGGLDALMEPEAGTKLGM 163

Query: 519 IIDKYFSEIXRVLXLGGRFVCISLLQSHILAKLM 620
              KY +E  RVL  GG+F C++L +SH+LA L+
Sbjct: 164 ---KYLNEAKRVLKSGGKFACLTLAESHVLALLL 194


>08_02_1260 -
           25680618-25680677,25680763-25680893,25681085-25681163,
           25681250-25681280,25681358-25681410,25681441-25681511,
           25681610-25681678,25681776-25681889,25683101-25683293
          Length = 266

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
 Frame = +3

Query: 195 FEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMK 374
           F+WY +Y  L   L  Y++    +L+ GCGNS    ++ D GY +I N+D+S VVI QMK
Sbjct: 33  FDWYQKYPALAPLLAVYVRRHHRLLLAGCGNSVFGENMVDDGYQDIVNIDISSVVIDQMK 92

Query: 375 NVNKARTNMKFMCMDATRMS-FEDEAFNVVLDKGTLDALM 491
              + + ++K+M MD   M+ FE  +F+ V+DKGTLD++M
Sbjct: 93  KKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIM 132


>05_04_0192 +
           18936955-18937168,18937385-18937498,18937588-18937656,
           18937807-18937826,18937932-18937984,18938082-18938139,
           18938338-18938367,18938468-18938719
          Length = 269

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
 Frame = +3

Query: 183 GNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVI 362
           G   F+WY  Y  L   L   +     +L+ GCGNS LS D+   GY  + NVD+S VVI
Sbjct: 36  GGAFFDWYQAYPALRPLLRARLPASSRVLMLGCGNSLLSEDMVKDGYEEVVNVDISSVVI 95

Query: 363 KQMKNVNKARTNMKFMCMDATRMS-FEDEAFNVVLDKGTLDALMPDATEETNAIIDKYFS 539
           +QM+  +     + +  MD   MS F D  F+ VLDKGTLDA+M    ++      K  +
Sbjct: 96  EQMREKHVDIPQLTYFQMDVRDMSLFGDGTFDCVLDKGTLDAMM--CGDDAPLGASKMLA 153

Query: 540 EIXRVLXLGGRFVCI 584
           E+ R+L  GG ++ +
Sbjct: 154 EVARILRPGGIYMLV 168


>11_06_0082 +
           19891184-19891332,19891349-19891445,19891584-19891725,
           19891853-19891935,19892356-19892490,19892759-19892863,
           19893043-19893168
          Length = 278

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
 Frame = +3

Query: 195 FEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVN-ITNVDVSEVVIKQM 371
           +EW+ ++      L   +    S+L  GCGNS L  +L   G    IT VD+S V +++M
Sbjct: 60  YEWFKDFSHFRHLLAPLLSPSISVLEVGCGNSRLGEELLREGVAGGITCVDLSPVAVQRM 119

Query: 372 KN--VNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTLDALMPDATEETN---AIID--- 527
           ++    +    ++ +  D   + F+ E+F++V++KGT+D L  D+ +  N     +D   
Sbjct: 120 RDRLAEQGTEGVEVVVADMLDLPFDRESFDLVIEKGTMDVLFVDSGDPWNPNPTTVDNVM 179

Query: 528 KYFSEIXRVLXLGGRFVCISLLQSHILAKLME 623
           K    I +VL   G FV I+  Q H   +  E
Sbjct: 180 KMLEGIHKVLKPEGIFVSITFGQPHFRRRFFE 211


>01_06_0299 +
           28305447-28305729,28305892-28306104,28306915-28307043,
           28307677-28307857,28308329-28308425,28309157-28309260,
           28309734-28309785,28310040-28310252
          Length = 423

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 264 ILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNV--NKARTNMKFMCMDATRMSF 437
           +L  G GN  L   L   G+ N+T  D SE  I+  KN+      T++ F+  D      
Sbjct: 251 VLDVGTGNGLLLQALAKQGFSNLTGTDYSEGAIELAKNLAARDGFTSINFLVDDILETKL 310

Query: 438 EDEAFNVVLDKGTLDAL 488
            D  F +V DKGTLDA+
Sbjct: 311 -DRKFKIVTDKGTLDAI 326


>01_01_0130 +
           1182504-1182817,1183024-1183152,1183582-1183716,
           1184296-1184392,1184633-1184736,1184924-1184975,
           1185261-1185458
          Length = 342

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = +3

Query: 198 EWYG-EYLELCGQLNKYI-KTKD----SILITGCGNSSLSADLYDVGYVNITNVDVSEVV 359
           +W+G E +++     K +   KD    S+L  G G+  LS  L   G+ ++T +D SE  
Sbjct: 147 DWFGTENMDVLVSWTKNLCSNKDLRSCSVLDIGTGSGRLSQQLAKQGFSDLTGIDHSEGA 206

Query: 360 IKQMKN--VNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTLDAL 488
           I+  +N  +     ++ F+  D      E   F +V+D+GTLD +
Sbjct: 207 IEVARNLAIRDGFEHINFLVDDVLESKLE-RRFELVMDEGTLDTI 250


>05_07_0008 -
           27007919-27007944,27008070-27008127,27008218-27008292,
           27008417-27008470,27008574-27008840,27008913-27009193,
           27009268-27009409,27009491-27009601,27009975-27010013,
           27010173-27010310,27010415-27010552,27011438-27011562,
           27011702-27011723
          Length = 491

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = +3

Query: 261 SILITGCGNSSLSADLY-DVGYVNITNVDVSEVVIKQMKNVNKARTNMKFMCMDATR--M 431
           S+L  G G    + +L  + G+V    +D  E VIK+ +N+N    N+ FMC D T   +
Sbjct: 61  SVLELGAGIGRFTGELAKEAGHV--LALDFIESVIKKNENINGHHKNITFMCADVTSPDL 118

Query: 432 SFEDEAFNVVLDKGTLDALMPDATEE 509
           + ED + +++     L  L  +  E+
Sbjct: 119 TIEDNSIDLIFSNWLLMYLSDEEVEK 144


>07_03_1543 +
           27582033-27582387,27583638-27583706,27583790-27583809,
           27584186-27584267,27584512-27584711
          Length = 241

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 408 MCMDATRMS-FEDEAFNVVLDKGTLDALM 491
           M MDA  MS F DE+F+  +DKGTLD+LM
Sbjct: 120 MQMDARDMSIFSDESFDCAIDKGTLDSLM 148



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 177 KRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVD 344
           + G   ++WY  Y  L   + ++   +  +L+ GCG++ +  D  D+   +  + D
Sbjct: 81  EEGGAPYDWYQRYAALRPFVRRFAPPESRVLMIGCGSAHMQMDARDMSIFSDESFD 136


>01_06_0361 +
           28733493-28733523,28733743-28733870,28733982-28734044,
           28735074-28735211,28735357-28735494,28735700-28735843,
           28736065-28736175,28736260-28736401,28736469-28736779,
           28737057-28737218,28737313-28737366,28737472-28737546,
           28737636-28737731
          Length = 530

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +3

Query: 204 YGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNVN 383
           Y  Y+ +   L  Y     S+L  G G    + +L      ++  +D  E VIK+ +++N
Sbjct: 69  YSSYVVILSLLPPY--EGKSVLELGAGIGRFTGELVKTAG-HVLAMDFIESVIKKNESIN 125

Query: 384 KARTNMKFMCMDAT--RMSFEDEAFNVVLDKGTLDALMPDATEE 509
               N  FMC D T   +  ED + +++     L  L  +  E+
Sbjct: 126 GHHKNASFMCADVTCPDLMIEDNSIDLIFSNWLLMYLSDEEVEK 169


>01_07_0375 -
           43152161-43152262,43152556-43152664,43153433-43153504,
           43153690-43153834,43153930-43154085,43154557-43154618,
           43154695-43155020
          Length = 323

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 24/63 (38%), Positives = 34/63 (53%)
 Frame = +3

Query: 417 DATRMSFEDEAFNVVLDKGTLDALMPDATEETNAIIDKYFSEIXRVLXLGGRFVCISLLQ 596
           DA  +SFED +    +D  T+   + + T      I+K  SE  RVL  GGRF+C+ L  
Sbjct: 195 DAEALSFEDGS----MDGYTIAFGIRNVTH-----IEKALSEAYRVLKRGGRFLCLEL-- 243

Query: 597 SHI 605
           SH+
Sbjct: 244 SHV 246


>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
          Length = 785

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = +3

Query: 342 DVSEVVIKQMKNVNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTLDAL 488
           ++ E++ ++   +    + ++ +CM+A R++ E E  +  +D G  DA+
Sbjct: 560 EIGEMMSREFTGMEDQPSELEVVCMEARRLAIEREESSTEIDSGDEDAI 608


>09_04_0654 -
           19247051-19247305,19247466-19247534,19247618-19247705,
           19248010-19248105,19248650-19248763,19248852-19248985,
           19249880-19250326
          Length = 400

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 568 PPSXKTLXISEKYLSIMAFVSSVAS-GIRASRV 473
           PP    L +S+ Y S++ FV SVA  G+ +SR+
Sbjct: 110 PPMPGFLPVSQSYSSLVRFVLSVARFGVESSRI 142


>04_04_1544 -
           34273909-34274220,34274340-34274769,34274933-34275030,
           34275178-34275280,34275386-34275471,34275590-34275677,
           34275773-34275886,34275975-34276179,34276530-34276557
          Length = 487

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 375 NVNKARTNMKFMCMDATRMSFEDEAFN----VVLDKGTLDALMPDATEETNAIIDKYFSE 542
           N++KA  N   + M A R + E E  +    V L    L  ++PDATE T  ++ ++ S+
Sbjct: 336 NLHKATGNPVLVYMAAGRFAQEVEKLSDKEAVDLVMSHLKKMLPDATEPTKYLVSRWGSD 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,313
Number of Sequences: 37544
Number of extensions: 252943
Number of successful extensions: 609
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)