Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D21
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)           143   1e-34
SB_5216| Best HMM Match : No HMM Matches (HMM E-Value=.)              104   6e-23
SB_59207| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_11258| Best HMM Match : efhand (HMM E-Value=1.4e-08)                30   1.9  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05)                   29   3.3  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               29   4.4  
SB_51903| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5)             28   5.8  
SB_11589| Best HMM Match : DUF165 (HMM E-Value=4.6)                    28   5.8  
SB_5872| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5)              28   5.8  
SB_922| Best HMM Match : DUF1532 (HMM E-Value=4.1)                     28   5.8  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             28   7.7  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   7.7  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      28   7.7  

>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score =  143 bits (346), Expect = 1e-34
 Identities = 71/165 (43%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
 Frame = +3

Query: 165 NSSXKRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVD 344
           N   K  ++ +EW+ EY  LC  ++KY+K  D +L   CG+S L  +LYDVGY NI +VD
Sbjct: 20  NKLMKEVSRPYEWHSEYEILCDLMHKYVKLNDRLLRLACGDSKLGENLYDVGYRNIISVD 79

Query: 345 VSEVVIKQMKNVNKA-RTNMKFMCMDATRMSFEDEAFNVVLDKGTLDALMPDATEETNAI 521
            SE VIK+M+  N + + +M++  MD T + ++DE+FNVV DK  LD    + +E+    
Sbjct: 80  SSEKVIKKMRKRNDSGKRDMEYTRMDVTDLKYDDESFNVVFDKQWLDYTFTNTSEDILKK 139

Query: 522 IDKYFSEIXRVLXLGGRFVCISLLQSHILAKLMEGXCEKSWMFRV 656
           +DK F+EI RVL +GGRF+  +L Q HIL KL+     + W+ RV
Sbjct: 140 VDKTFAEIQRVLKVGGRFIVCTLAQDHILDKLL-AHFSQGWLVRV 183


>SB_5216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score =  104 bits (250), Expect = 6e-23
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
 Frame = +3

Query: 195 FEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMK 374
           FEW   Y E    L  +++T D ILI GCGNS LS D+Y+ GY +ITN+D S +VI+ MK
Sbjct: 26  FEWCKSYKEFRHLLRGHVRTCDRILILGCGNSGLSEDMYNEGYTDITNIDYSPIVIENMK 85

Query: 375 NVNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTLDALMPDATEETNAIIDK------YF 536
               A   M++  MD T++ F   +F+VV++K TLDAL+    +  N  ++         
Sbjct: 86  RKCHAMRGMEWKVMDITKLDFPPNSFDVVIEKATLDALLVAEKDPWNPSVEALKTMECVL 145

Query: 537 SEIXRVLXLGGRFVCISLLQSHILAKLMEGXCEKSWMFRV 656
           S++  +L   G F+ I+  Q +     +   C  +W   V
Sbjct: 146 SKVSEILEPAGHFMSITFSQPNFRLPFLARSC-YNWSISV 184



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 119 LPRSHKEFSEKDYWNKFFXK 178
           LP+++  + +K+YWN  F K
Sbjct: 3   LPKNNSSYKDKEYWNNRFAK 22


>SB_59207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
 Frame = +3

Query: 186 NKAFEWYGEYLELCGQLNKYIKTKDSILIT---GCGNSSLSADL--YDVGYVNITNVDVS 350
           N  FEW+ ++ ++   L+KYI  KDS + T   GCG S     L  Y  G   +  +D S
Sbjct: 38  NNTFEWFLDFQDVHNSLDKYIH-KDSHINTLDLGCGTSEFCIQLFYYLRGNCKVAGIDFS 96

Query: 351 EVVIKQMKNVNKAR----TNMKFMCMDATRMSFEDEAFNVVLDKGTLDALMPDATEET 512
           E  I+ M+N+ +      +       +   + F  E F++++DKGT DA++     ET
Sbjct: 97  EEAIQVMRNLLRQHGLDDSVFSLHVGNVLDLPFSRECFDIIIDKGTADAVLRSPAAET 154


>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/77 (15%), Positives = 38/77 (49%)
 Frame = -2

Query: 544 ISEKYLSIMAFVSSVASGIRASRVPLSNTTLNASSSKDILVASMHINFILVLALFTFFIC 365
           I+  Y + +  V++  + +R      ++ ++  +   D+ + + + N++ ++  +   +C
Sbjct: 2   IATAYPTDLCIVTAYPTDLRIVTAYPTDLSIVTAYPTDLSIMTAYPNYLSIVTAYPTDLC 61

Query: 364 LITTSETSTFVIFTYPT 314
           ++T   T   ++  YPT
Sbjct: 62  IVTAYPTDLRIVTAYPT 78


>SB_11258| Best HMM Match : efhand (HMM E-Value=1.4e-08)
          Length = 182

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 70  KATVKFLQTPNVYNEFTTEKSQRI 141
           K TV+FLQ P+V++EF T    +I
Sbjct: 105 KRTVQFLQLPSVFDEFDTNHDMKI 128


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 120  YREVTKNS--AKKIIGTNSSXKRGNKAFE-WYGEYLELCGQLNKYIKTKDSI 266
            Y EV+  S  AK ++ ++       K  E WY  Y    GQLN Y+KT  S+
Sbjct: 1324 YIEVSSGSRGAKALLESSLFSPGSGKCLEFWYHMYGSSIGQLNVYLKTGASL 1375


>SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05)
          Length = 480

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 64  KLKATVKFLQTPNVYN-EFTTEKSQRIQRKRLLEQILQXNGEIKH 195
           +LK   KF +  N+ N E  TEK+QR+  +    +I Q   E++H
Sbjct: 385 RLKEAAKFEKDKNIMNQELATEKAQRLAVEEESNKINQRAMELQH 429


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 83  SFYKHQTFIMNLLPRSHKEFSEKDYWNKFFXKTGK*SIRMVRRIFRTMRSVK 238
           +FY     +M L   +H++ ++KD   KFF KT K S   +++  +   S K
Sbjct: 658 NFYCEDGLLMTLA--NHRQIAQKDCSEKFFKKTRKCSGNFLKKYRKNRGSFK 707


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 294 LSADLYDVGYVNITNVDVSEVVIKQMKNVNKARTNMKFMCMDATRMSFEDEA----FNVV 461
           +S  ++D      T+V ++  ++ ++KN  +   N + M  D T  S  DEA    + V+
Sbjct: 217 MSEAMHDTDGPQFTDVQLNYEIMDKVKNNEETHPNYEIMSSDLTDHSSADEATHELYEVM 276

Query: 462 LDKGTLDALMPD 497
            DK   D  M D
Sbjct: 277 GDKEEHDQNMYD 288


>SB_51903| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5)
          Length = 529

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 598 LCKSDMQTKRPPSXKTLXISEKYLSIMAFVSSVASGIRASRVPLSNTTL 452
           +   DM++K P S  TL + +   +   +   +ASG   S+ P+S  TL
Sbjct: 385 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 433


>SB_11589| Best HMM Match : DUF165 (HMM E-Value=4.6)
          Length = 275

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 598 LCKSDMQTKRPPSXKTLXISEKYLSIMAFVSSVASGIRASRVPLSNTTL 452
           +   DM++K P S  TL + +   +   +   +ASG   S+ P+S  TL
Sbjct: 163 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 211


>SB_5872| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5)
          Length = 529

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 598 LCKSDMQTKRPPSXKTLXISEKYLSIMAFVSSVASGIRASRVPLSNTTL 452
           +   DM++K P S  TL + +   +   +   +ASG   S+ P+S  TL
Sbjct: 385 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 433


>SB_922| Best HMM Match : DUF1532 (HMM E-Value=4.1)
          Length = 294

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 598 LCKSDMQTKRPPSXKTLXISEKYLSIMAFVSSVASGIRASRVPLSNTTL 452
           +   DM++K P S  TL + +   +   +   +ASG   S+ P+S  TL
Sbjct: 92  MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 140


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 446 FIFKRHSRSIHAHKLHIGSGFVYVFHLFNNNFRDIHICYIYI 321
           F +  H   I    +H    F Y+ HL+  ++R IH+  + I
Sbjct: 391 FTYLIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHVSPLLI 432


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 429  MSFEDEAFNVVLDKGTLDALMPDATEET 512
            M   + AF+++ D+G +D   PD TE+T
Sbjct: 1658 MGIYNPAFDMLDDEGPMDGNQPDTTEDT 1685


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 429 MSFEDEAFNVVLDKGTLDALMPDATEET 512
           M   + AF+++ D+G +D   PD TE+T
Sbjct: 189 MGIYNPAFDMLDDEGPMDGNQPDTTEDT 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,565,636
Number of Sequences: 59808
Number of extensions: 320825
Number of successful extensions: 882
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)