Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D18
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 239 2e-64
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 234 9e-63
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 3e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.76
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.76
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.1
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.4
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 25 9.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 239 bits (586), Expect = 2e-64
Identities = 116/163 (71%), Positives = 129/163 (79%)
Frame = +1
Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
+G K L ME YV+KRR+DG H+INL +TWEKLVLAAR + IENPADV VISSRP+G
Sbjct: 28 IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87
Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VNIPV
Sbjct: 88 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147
Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
IALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 96 VLALNEEDVTKMLAATTHLGAENV 167
VL ++D+ +LAA +H+G++N+
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNL 33
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 234 bits (572), Expect = 9e-63
Identities = 111/166 (66%), Positives = 130/166 (78%)
Frame = +1
Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
+G K L M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENPADV V+S+R +G
Sbjct: 27 IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86
Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VNIPV
Sbjct: 87 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146
Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGCAS 648
IALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG S
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLS 192
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 84 GGLDVLALNEEDVTKMLAATTHLGAENV 167
G ++L +ED+ ++LAA H+G++N+
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNL 32
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.6 bits (98), Expect = 3e-05
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Frame = +1
Query: 181 ETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQR-AVLKFAAH 357
+ ++Y +R +G H+I+L +T L A V +I + + GQ+ +V+ A
Sbjct: 72 QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKR 130
Query: 358 TGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLDPAQ 465
I R+ PG TN ++Q ++ P L+++L+P +
Sbjct: 131 ARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLE 190
Query: 466 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 618
+ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 191 NKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 220 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 396
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.76
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 355 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 519
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 520 CNTDSPLRFVDIAIPCNTKSSHSI 591
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 483 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP**DD 304
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 303 EHISGVLDG 277
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +1
Query: 94 TCSPSTRKMSPKCLLQPPILGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAV 273
TC ++S + P+LG + S + T++ RA+G + + T + A V
Sbjct: 443 TCVMLFSRVSTIAVTVSPVLG---IISSIITWLVVARAEGGKTLTIETTGANNPMLAGNV 499
Query: 274 VAIENPADVFVISSRPFGQR 333
V + +PA +I S F ++
Sbjct: 500 VGLLSPALYILILSIIFPEK 519
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.1
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -1
Query: 304 RTHQRGSRWLRQHEQPEQVFPRYDA 230
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 188 MSTNDVLMVPM*STCVVPGKNLFWLLVL 271
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 147 HLGAENVNFQXGDLCLQTTC*WYP--CDQL 230
H G EN+ +Q GDL + W CD+L
Sbjct: 308 HEGPENMEWQKGDLVIHFAGCWVENRCDEL 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,315
Number of Sequences: 5004
Number of extensions: 63064
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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