Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D18
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 226 1e-59
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 226 1e-59
06_03_0979 + 26502221-26502493 29 3.2
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.2
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 29 4.2
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 4.2
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 5.6
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 28 7.4
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.4
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 9.7
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 9.7
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 9.7
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 226 bits (553), Expect = 1e-59
Identities = 108/179 (60%), Positives = 132/179 (73%), Gaps = 1/179 (0%)
Frame = +1
Query: 106 STRKMSPKCLLQPPI-LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAI 282
S R+ + +L + LG K ME YVYKRR DG ++INL +TWEKL LAAR +VAI
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72
Query: 283 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 462
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 463 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 99 LALNEEDVTKMLAATTHLGAENVNFQ 176
L+ E+D+ MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 226 bits (553), Expect = 1e-59
Identities = 105/163 (64%), Positives = 127/163 (77%)
Frame = +1
Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
LG K ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRG 191
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 66 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 176
++A G L+ E+DV MLAA HLG +N +FQ
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>06_03_0979 + 26502221-26502493
Length = 90
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 648 GSTPTKPQHFTCQQPPHQTNRVGRLGV 568
G TP +P QQPPH T G LG+
Sbjct: 7 GGTPVEPCGRLSQQPPHHTAYPGDLGL 33
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 166 TFSAPRWVVAASILVTSSSLRASTSNP 86
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Frame = -3
Query: 647 EAHPRSLNTSRANNHHIKPIEWEDLVLH---GIAMSTNLSGESVLH-KA------ITGML 498
EAH ++ S H+K E LH G++ S NLS ++++ KA + +
Sbjct: 1311 EAHVKTRTRSSKRTAHMKG-EKASTELHCKNGLSCSDNLSTDTLVRGKANCILDGVDQSI 1369
Query: 497 TYEASVMG*WSCAGSNTIKRRGSRN 423
Y S+ G W+C NT+ +N
Sbjct: 1370 DYTCSIFGCWNCLFVNTLNSGSIQN 1394
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 309 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 401
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 349 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 194
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 173 PXWRPMSTNDVLMVPM*STCVVPGKNLFWLLVLS*P 280
P WRP++ L++ S C++ G ++W+ +L P
Sbjct: 1018 PAWRPLADPPYLVLNKTSPCILGG--IYWIAILPSP 1051
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 210 WYPCDQLASYLGKTCSGCSCCRSHREP 290
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 612 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 514
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 163 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 50
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 355 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 528
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 529 DSPLR 543
+ P++
Sbjct: 330 EQPMQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,326,875
Number of Sequences: 37544
Number of extensions: 468865
Number of successful extensions: 1135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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