Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D14
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   269   1e-72
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             145   3e-35
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   1e-30
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                42   4e-04
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)                  29   2.2  
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         29   2.9  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           29   3.8  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   6.7  
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)                 27   8.8  
SB_7258| Best HMM Match : rve (HMM E-Value=1.1e-14)                    27   8.8  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  269 bits (659), Expect = 1e-72
 Identities = 124/185 (67%), Positives = 149/185 (80%), Gaps = 4/185 (2%)
 Frame = +3

Query: 60  KVFSFNKXPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 227
           ++ SF++  +  T   KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 228 TEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRIS 407
           TEIIAFS++ DEF+ I CEV+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS
Sbjct: 99  TEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQIS 158

Query: 408 RDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEXTLRLVQAFQFTDXHGEVC 587
           +DYGVL E+ G+  RGLFIIDDK  LRQITINDLPVGRSV+ TLRL+QAFQFTD HGEVC
Sbjct: 159 KDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVC 218

Query: 588 PANWR 602
           PA WR
Sbjct: 219 PAGWR 223


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  145 bits (351), Expect = 3e-35
 Identities = 65/90 (72%), Positives = 77/90 (85%)
 Frame = +3

Query: 333 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 512
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 513 VGRSVEXTLRLVQAFQFTDXHGEVCPANWR 602
           VGRSV+ TLRL+QAFQFTD HGEVCPA WR
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWR 92


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  129 bits (312), Expect = 1e-30
 Identities = 56/80 (70%), Positives = 69/80 (86%)
 Frame = +3

Query: 90  QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 269
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 270 KIGCEVLGASTDSHFTHLAW 329
            I  EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +3

Query: 453 GLFIIDDKQNLRQITINDLPVGRSVEXTLRLVQAFQFTDXH 575
           GLFIIDDK  LRQIT+NDLPVGRSV+ TLRLVQAFQ+TD H
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 513 VGRSVEXTLRLVQAFQFTDXHGEVCPANWR 602
           VGRSV+ TLRLVQAFQ+TD HGEVCPA W+
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWK 30


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
 Frame = +3

Query: 291 GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 443
           G S D   +H  W+    K            N P+I+D+   ++   G++D    +  G+
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62

Query: 444 PF--RGLFIIDDKQNLRQITINDLPVGRSVEXTLRLVQAFQFTDXHGEVCPANWR 602
           P   R +FII   + L+   +     GR+ +  LR++ + Q T       P +W+
Sbjct: 63  PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWK 117


>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +3

Query: 12  SKASHSPVLSVFVYYSKVFSFNKXPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 179
           S +S SPVLSV    + V S +   +Q T   P F AT +  G F D  L+   GK
Sbjct: 204 SSSSRSPVLSVTDGIA-VQSSSTESVQPTLILPPFTATGLHTGSFYDDCLAVLSGK 258


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 512 GQVVDGDLPEVLLVVDD-EESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESAL 348
           G++ D  +   L  ++  + ++EG+A+    H+V  R+ +  + Y R + GT+S L
Sbjct: 336 GKLTDESMDSFLSELEKVDTTAEGEAQRYFDHAVTLRNTILFLRYNRTL-GTDSTL 390


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 488 PEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESAL 348
           P+VL+V D  E      +LL  H V  R    +  Y R +    SAL
Sbjct: 464 PKVLMVDDGTEFKGATTKLLTDHGVEIRGFFTVADYDRGLVAMASAL 510


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 381 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVE--XTLRLVQ 551
           + DKS    R +  LD+  GI   G  ++ +  N+ +ITIN+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 552 AFQFTDXHG 578
            F F+D HG
Sbjct: 195 EFSFSDKHG 203


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 387 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 506
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
          Length = 754

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 60  KVFSFNKXPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 179
           K FSF   P  + +P P+ K    V  + + ISL+    K
Sbjct: 321 KTFSFELAPSAIARPLPKSKHAKTVENDVRLISLTSQVAK 360


>SB_7258| Best HMM Match : rve (HMM E-Value=1.1e-14)
          Length = 425

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 488 PEVLLVVDDEESSEGDARLLVQHSVVARDA 399
           P+VL+V D  E  +   +LL  H VV R A
Sbjct: 242 PKVLMVDDCTEFKDATTKLLTDHGVVVRRA 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,835
Number of Sequences: 59808
Number of extensions: 315690
Number of successful extensions: 1148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)