Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D13
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    28   0.90 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   2.7  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   2.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   2.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.3  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   6.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.3  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   6.3  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   6.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.4  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   8.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +2

Query: 158 ITVIPTDEKSPTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERK 337
           +++   D KSP K             + Q+E++  ++ G      + +K  K NLK   +
Sbjct: 398 VSINEEDPKSPKKETSYQVQEKLSQ-FFQEEMIHLLEMGEACTSRESQKTRKKNLKENIR 456

Query: 338 CDETTKTQI 364
              TT T I
Sbjct: 457 KQRTTSTAI 465


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 129 NVATNSVITALL*YLRMKN---LLQRTSKWTLLLLQKITIYKMKFSTISSKEQSR 284
           N  TN   T LL YL +     LLQ  S WT     K +IY + F  +S+ E++R
Sbjct: 105 NAETNK--TVLLPYLNVLEKLLLLQDYSSWTHGNSCKTSIYILLFFALSNTEKTR 157


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 342 SHFLSDLRFNFICFSGWLQGA 280
           + F++ +   FI  SGWLQGA
Sbjct: 2   NRFITSILVVFISMSGWLQGA 22


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 216 LLLQKITIYKMKFSTISSKEQSRPVANQKNR 308
           +L +K  I K+K  T +SKE+S+ V +  NR
Sbjct: 135 ILEKKEEISKLKDRTEASKEESKTVTDHSNR 165


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 197 NFKMDTLAFTEDNYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERK 337
           N K +  + +E+N +   +LDD    T+ P  + E   +LN+++E K
Sbjct: 258 NGKFEFSSRSEENSV---LLDDFTPETVQPLEENELDTELNIENEAK 301


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 140 GSDVSTFRCLLIYY 99
           GS++S FRCLL+++
Sbjct: 107 GSELSLFRCLLLFF 120


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 233 NYLQDEILDDIKQGTIAPCSQPEKQIKLNLK 325
           +Y + +I   I++ T   C + EK++ +N+K
Sbjct: 29  DYYESDIYSQIRRLTEEKCIETEKELPVNIK 59


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 361  LSFCGFITFSFRLKI*FYLFFWLA 290
            LS CGF+ F+F     +Y  F LA
Sbjct: 962  LSECGFVLFNFSQPYYYYFSFLLA 985


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 263 IKQGTIAPCSQPEKQIKLNLKSERKCDETTKTQIHSENTLH 385
           I  G   P S  E Q+ L +   +  D+T  TQI  +N  H
Sbjct: 175 IMHGNGKPLSNYEGQLGLRIVYWKLLDKTYSTQIFMDNLSH 215


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 194 KNFKMDTLAFTEDNYLQDEILDDIKQGTIAP-CSQPEKQIKLNLKSE 331
           KNF   T A+   NY++ +I+DD K+  ++   SQ   +  + L+S+
Sbjct: 331 KNFNSLT-AYELPNYIRSDIIDDFKKEAMSEHLSQASNESFIVLRSK 376


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 216 LLLQKITIYKMKFSTISSKE 275
           LLL K+ +YK+  S + S E
Sbjct: 373 LLLDKVRLYKLSISVVESSE 392


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 176 DEKSPTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAPCSQPEKQIK 313
           DEKS  ++ +MDT+    +N    E   + K+    P   P +++K
Sbjct: 53  DEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLK 98


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 271 LLDIVENFIL*IVIFCKSKSVHFEVLCRRFFI 176
           L+D VE  I    + C  KS HF  +  +FF+
Sbjct: 801 LVDTVEQSIQNAYVTCIEKSEHFIYIENQFFV 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,308
Number of Sequences: 5004
Number of extensions: 40419
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)