Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D13
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0114 + 25958834-25961296 30 1.2
05_03_0368 - 13127536-13128429 29 2.1
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 29 2.1
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 28 4.8
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333... 28 4.8
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 27 6.3
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 27 8.4
07_01_0867 - 7198874-7199764 27 8.4
02_02_0289 - 8606357-8607277 27 8.4
>02_05_0114 + 25958834-25961296
Length = 820
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 215 LAFTEDNYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERKCDETTKTQIHSENTLHGYC 394
L F + D+++ +I T C + L +E KC T +IH ++GYC
Sbjct: 388 LKFKDSGLHLDKVIYNIAMDTY--CKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYC 445
Query: 395 ILKE 406
+ E
Sbjct: 446 LKGE 449
>05_03_0368 - 13127536-13128429
Length = 297
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 290 SQPEKQIKLNLKSERKCDETTKTQIHSENTLHGYCILKEKGTHITSNDMKHESRSFHEDT 469
S+ +K+ + ER C+E ++T S+ + K +H RS+ +D+
Sbjct: 217 SKEDKKKSRRKRRERSCEEDSETD--SDKKIKRRHHRKSSKEERERGRSRHRRRSYDDDS 274
Query: 470 NFTDHXTKRK 499
+ DH T R+
Sbjct: 275 SDDDHHTLRR 284
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 83 WKNINDNKLIDSEMSKRRYQQRHN 154
W+ IND++ I S RR+QQRH+
Sbjct: 594 WREINDDEDIVGCYSARRWQQRHD 617
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 350 TKTQIHSENTLHGYCILKEKGTHITSN-DMKHESRSFHEDTNFTDHXTK 493
+ Q+HSEN +L+E GTH + K S+ F +D H T+
Sbjct: 436 SSNQMHSENQDGSVMVLREDGTHPSPGLKCKICSQEFSDDQGLGLHWTE 484
>01_07_0226 +
42130300-42131430,42131530-42131715,42133244-42133345,
42133425-42133481,42133563-42133658,42133736-42133828,
42133945-42134064,42134155-42134187,42134266-42134316,
42135129-42135191
Length = 643
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 254 LDDIKQGTIAPCSQPEKQIKLNLKSERKCDETTK 355
++D+K + S+P+K+ K + RK DE+T+
Sbjct: 234 IEDVKSSSQQEISKPKKKKKQKKRQRRKMDESTE 267
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 395 CSIHGEYFLNVFEFLWFHHI---FFQT*DLILSVF 300
C + G F ++F+FLWFH + +F T +L F
Sbjct: 19 CVVMGVQFGSLFKFLWFHIVLAEYFYTHSCVLFGF 53
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/108 (20%), Positives = 45/108 (41%)
Frame = +2
Query: 131 RRYQQRHNCITVIPTDEKSPTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAPCSQPEKQI 310
RR + H+C +P++EK ++ + D + E L + + ++ +
Sbjct: 472 RRLENVHSCTVPVPSEEKPEPRSIRDDDMTMCLQRLDSLESLCNHLASRPPEIPREKEHM 531
Query: 311 KLNLKSERKCDETTKTQIHSENTLHGYCILKEKGTHITSNDMKHESRS 454
LN KC E + ++ LH ++K+K T ++ SR+
Sbjct: 532 LLNSFERIKCIEADLER--TKRVLHA-TVVKQKALVETLEAVQESSRA 576
>07_01_0867 - 7198874-7199764
Length = 296
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 326 SERKCDETTKTQIHSENTLHGYCILKEKGTHITSNDM 436
S ++C K Q+H L+ I E HI +D+
Sbjct: 173 SSKRCPVLQKLQVHDSQDLYNLTIFSESLLHIELSDL 209
>02_02_0289 - 8606357-8607277
Length = 306
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 233 NYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERKCDETTKTQIHSENTLHGYCILKEKG 412
+YL ++ L D +GTI+ C K + L +E D + +++ +N L + K
Sbjct: 241 DYLYNKTLYDTVEGTISSCGLFPKLVGAILDNENYTD-IVRNKLYKKNHLKNLSASQRKL 299
Query: 413 THIT 424
H T
Sbjct: 300 FHAT 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,744
Number of Sequences: 37544
Number of extensions: 207031
Number of successful extensions: 552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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