Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D11
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 36 0.025
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 34 0.099
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 31 0.53
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.70
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 31 0.70
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 31 0.70
AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical ... 31 0.70
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 2.1
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 2.1
U13070-7|AAC46638.1| 414|Caenorhabditis elegans Rabaptin (rab e... 29 2.1
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 29 2.8
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 29 2.8
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 29 2.8
U40029-8|AAA81128.2| 275|Caenorhabditis elegans Hypothetical pr... 29 3.7
U97191-7|AAB52429.1| 241|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical ... 28 4.9
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 28 6.5
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 6.5
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 6.5
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 6.5
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 6.5
U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-link... 28 6.5
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 28 6.5
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 28 6.5
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 28 6.5
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 28 6.5
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 28 6.5
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 28 6.5
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 28 6.5
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 28 6.5
AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical ... 28 6.5
AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical ... 28 6.5
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 27 8.6
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
protein C50C3.2 protein.
Length = 2107
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +3
Query: 105 EPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 284
E PED N EDI +E +++ S ++ +E D++ Q+ ++L Q ++ +++ +
Sbjct: 416 ESPEDMNAEDIEKEIRVIDGITVRCTSVVEQIENIEDELRQKPEQLNQLSVYASKQVNDL 475
Query: 285 NK 290
N+
Sbjct: 476 NE 477
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 284
E+D + + LESTLDEL L+ +R D +Q ++ ++ + I QE+ EE
Sbjct: 1023 EEDKVNHLNKTKAKLESTLDELEDTLEREKRGRQDCEKQRRK-VEGELKIAQELIEE 1078
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 132 DITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 308
D+ E+L+ L + + LE DD+H+++ L SN + + + + +SNS+
Sbjct: 149 DLARNVEILQEENSNLTAKNEKLEETVDDLHEKVANLETSNKELTEINVDNERKISNSS 207
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 156 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 156 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 156 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 156 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 134 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 178
>AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical
protein ZC132.6 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 129 EDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 281
E + +Y EST++ LN L + KND I Q KEL ++ + I ++R+
Sbjct: 144 EALKNKYTNSESTINSLNEKLLKEKSKNDSIQAQ-KELYENLVIIIDQLRQ 193
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 117 DDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 239
++ NE + + LES L ++ L+ ++ +N+D+ +Q K+
Sbjct: 915 EERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKK 955
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
E E+ + LES +++L ALD R D + +K+ +++ ++ ++ EE +
Sbjct: 1617 ETKQKEEALRIKKKLESDINDLEIALDHANRAYADAQKTIKKYMETVQELQFQIEEEQR 1675
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 117 DDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 239
++ NE + + LES L ++ L+ ++ +N+D+ +Q K+
Sbjct: 915 EERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKK 955
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
E E+ + LES +++L ALD R D + +K+ +++ ++ ++ EE +
Sbjct: 1617 ETKQKEEALRIKKKLESDINDLEIALDHANRAYADAQKTIKKYMETVQELQFQIEEEQR 1675
>U13070-7|AAC46638.1| 414|Caenorhabditis elegans Rabaptin (rab
effector) protein 5 protein.
Length = 414
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 156 LESTLDELNSALDFLERKNDD---IHQQLKELLQSNIAIRQEMREENKDV 296
+E D+LN A D L++ +DD + ++ K+LL S QE+R E D+
Sbjct: 125 IEVFTDQLNLARDKLQQADDDFVTLGKKYKKLLGSTRKSAQELRSEKIDM 174
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREEN 287
E+D + LE TLD+L +L+ +R D+ +Q K ++ + I QE +E+
Sbjct: 1022 EEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQ-KRKVEGELKIAQENIDES 1078
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREEN 287
E+D + LE TLD+L +L+ +R D+ +Q K ++ + I QE +E+
Sbjct: 1022 EEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQ-KRKVEGELKIAQENIDES 1078
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREEN 287
E+D + LE TLD+L +L+ +R D+ +Q K ++ + I QE +E+
Sbjct: 1025 EEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQ-KRKVEGELKIAQENIDES 1081
>U40029-8|AAA81128.2| 275|Caenorhabditis elegans Hypothetical
protein F10G7.3 protein.
Length = 275
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 105 EPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDD 218
E +DD E EE +L ES + L +ALD E+K D
Sbjct: 191 EEEDDDEMEANAEEVDLNESFNERLANALDGAEQKGAD 228
>U97191-7|AAB52429.1| 241|Caenorhabditis elegans Hypothetical
protein F53F10.1 protein.
Length = 241
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 102 IEPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQS 251
+E + D NE++ E E L+ +ELN + +E I Q L+ +QS
Sbjct: 176 VETTKSDINEELKAENEFLKDQANELNKCREKIETDGKTI-QDLRLRIQS 224
>AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical
protein Y32B12B.2 protein.
Length = 789
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 120 DNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVS 299
D ED + ES DEL+ LER++D H++ ++ + I E EE D
Sbjct: 627 DEEEDYDNTEIVYESEEDELDGLEAKLERESDRRHKKWEKKNKVMIDSDDEEEEEENDDD 686
Query: 300 NSN 308
N
Sbjct: 687 KEN 689
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +3
Query: 108 PPEDDNNEDITEEYELLESTLDELNSALDFLERK----NDDIHQQLKELLQSNI 257
PP+ D++ I E ELL++ + ++L+ + K + DI+Q+L E L ++
Sbjct: 255 PPKIDSHAKIQAERELLDALKGSIEASLELKDLKKTASSKDIYQRLYERLPCHL 308
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 141 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 308
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V + N
Sbjct: 704 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 759
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 141 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 308
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V + N
Sbjct: 704 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 759
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 141 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 308
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V + N
Sbjct: 464 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 519
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 141 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 308
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V + N
Sbjct: 704 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 759
>U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform e protein.
Length = 334
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 271 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 312
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 551 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 592
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 564 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 605
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 604 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 645
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 564 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 605
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 601 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 642
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +3
Query: 114 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 284
EDD+N+D ++ E E +E + A D E ++D+ ++++KE + + + ++ E
Sbjct: 49 EDDDNDDDEDDDEEEEDEDEEEDEAED--EAEDDEENEEVKEEKEDEEVVEERVKVE 103
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +3
Query: 108 PPEDDNNEDITEEYELLESTLDELNSALDFLERK----NDDIHQQLKELLQSNI 257
PP+ D++ I E ELL++ + ++L+ + K + DI+Q+L E L ++
Sbjct: 255 PPKIDSHAKIQAERELLDALKGSIEASLELKDLKKTASSKDIYQRLYERLPCHL 308
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 506
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 551 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 592
>AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical
protein T28C12.4b protein.
Length = 578
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 153 LLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
LL T E+NSA+D L RKN +++ + + +R ++K
Sbjct: 347 LLRGTEKEINSAIDVLSRKNRLSRSKIEAMTEKVYGDSPALRADSK 392
>AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical
protein T28C12.4a protein.
Length = 658
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 153 LLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 290
LL T E+NSA+D L RKN +++ + + +R ++K
Sbjct: 427 LLRGTEKEINSAIDVLSRKNRLSRSKIEAMTEKVYGDSPALRADSK 472
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 117 DDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELL-----QSNIAIRQEMRE 281
++ + E L S + +++ D K+ Q+L + L Q +IAIR+E+ +
Sbjct: 183 EEEKSRVHSEISRLRSDIKRVHALRDKERSKHSSSSQELLKRLNGCISQHDIAIREEISK 242
Query: 282 ENKDVSNSN 308
+D +N N
Sbjct: 243 ARRDTTNKN 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,289
Number of Sequences: 27780
Number of extensions: 224035
Number of successful extensions: 947
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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