Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D09
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 100 6e-22
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 100 6e-22
AY204199-1|AAO39200.1| 360|Caenorhabditis elegans nuclear recep... 30 1.2
AL022288-6|CAA18368.1| 341|Caenorhabditis elegans Hypothetical ... 30 1.2
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 28 3.6
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 28 3.6
Z92817-6|CAB60324.1| 384|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z83111-7|CAB05534.2| 384|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 100 bits (240), Expect = 6e-22
Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 365
WFY R A++ RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K
Sbjct: 53 WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111
Query: 366 LVEKVQDG-GRILTTQGRRDLDRI 434
VEK DG GRIL+ QGR+DLDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 35 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 181
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DP
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 100 bits (240), Expect = 6e-22
Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 365
WFY R A++ RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K
Sbjct: 53 WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111
Query: 366 LVEKVQDG-GRILTTQGRRDLDRI 434
VEK DG GRIL+ QGR+DLDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 35 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 181
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DP
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51
>AY204199-1|AAO39200.1| 360|Caenorhabditis elegans nuclear receptor
NHR-113 protein.
Length = 360
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 482 TCCLACCLAFRRTLGSDSVKVSSTLCGENATTVLNFLNKLQC 357
+CC+AC FRRT VK T C N V++F K C
Sbjct: 43 SCCIACAAFFRRT-----VKNQFT-CNANNDCVISFEKKFTC 78
>AL022288-6|CAA18368.1| 341|Caenorhabditis elegans Hypothetical
protein ZK1025.9 protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 482 TCCLACCLAFRRTLGSDSVKVSSTLCGENATTVLNFLNKLQC 357
+CC+AC FRRT VK T C N V++F K C
Sbjct: 24 SCCIACAAFFRRT-----VKNQFT-CNANNDCVISFEKKFTC 59
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCGENA 393
CC AC + FRR G+ +K S CGE A
Sbjct: 41 CCRACAVFFRRRAGTKYLRLKCLSVHCGEAA 71
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCGENA 393
CC AC + FRR G+ +K S CGE A
Sbjct: 26 CCRACAVFFRRRAGTKYLRLKCLSVHCGEAA 56
>Z92817-6|CAB60324.1| 384|Caenorhabditis elegans Hypothetical
protein F57G8.6 protein.
Length = 384
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCG 402
CC AC + FRR G+ +K SS CG
Sbjct: 21 CCRACAVFFRRRAGTKYLRLKCSSENCG 48
>Z83111-7|CAB05534.2| 384|Caenorhabditis elegans Hypothetical
protein F57G8.6 protein.
Length = 384
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCG 402
CC AC + FRR G+ +K SS CG
Sbjct: 21 CCRACAVFFRRRAGTKYLRLKCSSENCG 48
>Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical
protein C10C6.3 protein.
Length = 319
Score = 27.1 bits (57), Expect = 8.2
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 228 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 401
I S + K T ++ G R G P SGS +K + A+K EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,743
Number of Sequences: 27780
Number of extensions: 235279
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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