Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D08
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    67   8e-13
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   1.9  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   2.5  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   4.4  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   4.4  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   4.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   5.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    24   5.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   5.9  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 66.9 bits (156), Expect = 8e-13
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESKVLQEG*PEA 207
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S     +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 37  KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESKVL 186
           +L+ +A S K H+ +  ++K+++NG KK RK   +S   H     + +++L
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRML 218


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 22  FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 126
           +K+D  +  +AK  +  NHN ++ A +  I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 80  TKTAKLTEMVSKSQGRPGTN 139
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  NQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESKVLQEG 195
           N N   +   +    K RH ++L +  K+  E+KVL +G
Sbjct: 189 NANYPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQG 227


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 37  KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXH 153
           +L +  +S   TN +Q  + H N      KT H+    H
Sbjct: 138 QLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQRSH 176


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  HTNHNQNRKAHRNGIKKPRKTRHES 141
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
          TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 57 LCHFDEFSIHFESED 13
          +CHF+E SI  ES++
Sbjct: 1  MCHFNELSIEIESKN 15


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 5    LVLSSDSKWIENSSKWQSQRIIQ 73
            L+  + S+W   S +W+S R IQ
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,596
Number of Sequences: 5004
Number of extensions: 19522
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)