Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D06
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              28   7.4  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 300  VKAAKYHFLLCLSSVFCTCLLAIFSCY 220
            V++ K+ F + +S+  C CL  + SCY
Sbjct: 1049 VRSIKFGFYILISTHICACLWFVESCY 1075


>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 363 YSVK*CNLINLANKVTMLFIVVKAAKYHFLLCLSSVFCTCLLAIFSCYR*KHLGYFFLF 187
           YSV    L+      T   +VV +     LL + S F  CLL ++S +  + LG +  F
Sbjct: 628 YSVFTRRLLGGYTVFTRRLLVVYSTVTRCLLDVYSAFTRCLLGVYSMFTRRLLGVYLTF 686


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 128 DLDYVYAIHYYFCLLIVIC 184
           D+ YV  I ++FC+L V+C
Sbjct: 262 DIAYVCLIFFFFCVLAVVC 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,975
Number of Sequences: 59808
Number of extensions: 205788
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)