Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D06
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    28   4.9  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    27   8.6  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    27   8.6  

>U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical
           protein F47F6.3 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 198 SILNVFIGNTKRSPIDRYKKHLTNRGESD 284
           + LNVF+ N  R+P D  K HL NR ++D
Sbjct: 478 NFLNVFLQNVMRNPEDMEKLHL-NRKKAD 505


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 309 FIVVKAAKYHFLLCLSSVFCTCLLAIFSCYR*KHLG-YFFLFLQMTI 172
           +IVV     H   C +S FCT L+ I   +  K++G Y +L +  ++
Sbjct: 13  YIVVSKRISHLGFCSTSFFCTILIIIIVKFSNKNVGSYKYLMIIFSV 59


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 345 NLINLANKVTMLFI--VVKAAKYHFLLCLSSVFCTCLLAIFSCY 220
           N  NL +K T+ F+         H  +  S  F  CL+ +F CY
Sbjct: 10  NETNLLSKSTLSFLDDTFVRVSLHIAMLSSMFFLICLMFLFPCY 53


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 345 NLINLANKVTMLFI--VVKAAKYHFLLCLSSVFCTCLLAIFSCY 220
           N  NL +K T+ F+         H  +  S  F  CL+ +F CY
Sbjct: 10  NETNLLSKSTLSFLDDTFVRVSLHIAMLSSMFFLICLMFLFPCY 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,766
Number of Sequences: 27780
Number of extensions: 181955
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)