Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D05
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 243 2e-65
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 243 2e-65
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 243 2e-65
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 42 1e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.25
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 27 2.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.5
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 243 bits (595), Expect = 2e-65
Identities = 108/150 (72%), Positives = 127/150 (84%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 53 RGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGG
Sbjct: 113 SNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGG 172
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
RIDKP+LKAGRA+HKY+VKRNCWP RGVA
Sbjct: 173 RIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2
Query: 44 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSL 139
MGRVIRAQRK +G +F +HT+ RKGA +LR+L
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTL 31
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
R+G A L +AERHGYI+GVV+ IIHDPG
Sbjct: 22 RKGAAQLRTL--DFAERHGYIRGVVQKIIHDPG 52
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 243 bits (595), Expect = 2e-65
Identities = 108/150 (72%), Positives = 127/150 (84%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 53 RGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGG
Sbjct: 113 SNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGG 172
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
RIDKP+LKAGRA+HKY+VKRNCWP RGVA
Sbjct: 173 RIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2
Query: 44 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSL 139
MGRVIRAQRK +G +F +HT+ RKGA +LR+L
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTL 31
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
R+G A L +AERHGYI+GVV+ IIHDPG
Sbjct: 22 RKGAAQLRTL--DFAERHGYIRGVVQKIIHDPG 52
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 243 bits (595), Expect = 2e-65
Identities = 108/150 (72%), Positives = 127/150 (84%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 53 RGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGG
Sbjct: 113 SNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGG 172
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
RIDKP+LKAGRA+HKY+VKRNCWP RGVA
Sbjct: 173 RIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2
Query: 44 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSL 139
MGRVIRAQRK +G +F +HT+ RKGA +LR+L
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTL 31
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
R+G A L +AERHGYI+GVV+ IIHDPG
Sbjct: 22 RKGAAQLRTL--DFAERHGYIRGVVQKIIHDPG 52
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +1
Query: 331 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 510
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 511 KVLPSSNRGMVGIVAGGGRIDKPILKAGRA 600
+ + ++ +G+V+ + + KAGR+
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS 249
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 557 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 387
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 568 IDKPILKAGRAYHKYKVKRNCWPYVRG 648
++KPI K+K K +CW +RG
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRG 94
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 416 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 318
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,123
Number of Sequences: 5004
Number of extensions: 60442
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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