Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D05
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 265 2e-71
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 188 3e-48
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 50 1e-06
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 0.82
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 29 4.4
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 29 4.4
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 29 4.4
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.4
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 29 4.4
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 265 bits (650), Expect = 2e-71
Identities = 118/150 (78%), Positives = 134/150 (89%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+
Sbjct: 54 RGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTII 113
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGG
Sbjct: 114 SSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGG 173
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
RIDKP+LKAGRAYHKYK KRNCWP VRGVA
Sbjct: 174 RIDKPMLKAGRAYHKYKAKRNCWPRVRGVA 203
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +2
Query: 44 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLR 133
MGRVIR QRKGAGS+F SHTK RKGA LR
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLR 30
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +3
Query: 87 FSFLTRRRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
F+ T+ R K N + YAERHGYIKGVVK+IIHDPG
Sbjct: 16 FTSHTKHR-KGAANLRVHDYAERHGYIKGVVKEIIHDPG 53
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 188 bits (458), Expect = 3e-48
Identities = 83/112 (74%), Positives = 98/112 (87%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+
Sbjct: 12 RGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTII 71
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 540
++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 72 SSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Frame = +1
Query: 259 RKELFIAPEGLYTGQFVYC--GKK---ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL 423
+++L IAP+ + G + GK A L+ G+ P+ +P GT+V N+E G +L
Sbjct: 83 QEKLVIAPDEIQVGDVMTASRGKPESLALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQL 142
Query: 424 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGR 597
ARA+G A +I + V+LPS +K + S VG V+ R ++ I KAGR
Sbjct: 143 ARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVGRVSNIERKNRVIGKAGR 198
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 560 PPATIPTMPLLLDGRTFLAPDGSFT 486
P AT + L+LD TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 31.1 bits (67), Expect = 0.82
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = -2
Query: 401 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAMKSSFLVLNLYGSRKCTT 222
F+S L T +P+ P G+TF T +V F +NW + + SG + + ++ + S +
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 221 AKGAPLXRVMDYILNNSLDVSMTFS 147
+G + +D++MT +
Sbjct: 1122 IRGRWTNLTDPSLKTRLMDITMTIA 1146
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 480 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 307
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 306 KLACVEPFGSNEELLP 259
CV F +++ P
Sbjct: 136 NQRCVS-FNLKKQITP 150
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 421 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 549
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 624 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 499
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 624 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 499
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 624 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 499
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 624 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 499
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 86 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 624 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 499
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,115,015
Number of Sequences: 59808
Number of extensions: 485782
Number of successful extensions: 1206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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