Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D05
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 233 6e-62
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 233 6e-62
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 233 1e-61
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 55 4e-08
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 55 4e-08
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 33 0.17
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 30 1.2
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 3.6
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 3.6
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 4.7
At5g20050.1 68418.m02387 protein kinase family protein contains ... 28 4.7
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 28 6.2
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 8.2
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.2
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 8.2
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 233 bits (571), Expect = 6e-62
Identities = 101/150 (67%), Positives = 126/150 (84%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLA V FR P+++ +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++
Sbjct: 55 RGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVI 114
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
CN+E +GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G VAGGG
Sbjct: 115 CNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGG 174
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
R +KP LKAG AYHKYK KRNCWP VRGVA
Sbjct: 175 RTEKPFLKAGNAYHKYKAKRNCWPVVRGVA 204
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/33 (78%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = +2
Query: 44 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSL 139
MGRVIRAQRKGA GSVF SHT RKG K RSL
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSL 33
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
R+G A F Y ER+GY+KG+V +IIHDPG
Sbjct: 24 RKGPA--KFRSLDYGERNGYLKGLVTEIIHDPG 54
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 233 bits (571), Expect = 6e-62
Identities = 103/150 (68%), Positives = 127/150 (84%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLA V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +V
Sbjct: 54 RGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVV 113
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
CN+E +GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS R M+G VAGGG
Sbjct: 114 CNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGG 173
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
R +KP+LKAG AYHKY+VKRN WP VRGVA
Sbjct: 174 RTEKPMLKAGNAYHKYRVKRNSWPKVRGVA 203
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/32 (81%), Positives = 26/32 (81%)
Frame = +2
Query: 44 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSL 139
MGRVIRAQRKGAGSVF SHT RKG K RSL
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSL 32
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
R+G A F + ER+GY+KGVV +IIHDPG
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVVTEIIHDPG 53
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 233 bits (569), Expect = 1e-61
Identities = 101/150 (67%), Positives = 126/150 (84%)
Frame = +1
Query: 205 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 384
RGAPLA V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++
Sbjct: 54 RGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVI 113
Query: 385 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 564
CN+E +GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS R M+G VAGGG
Sbjct: 114 CNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGG 173
Query: 565 RIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
R +KP+LKAG AYHKY+VKRNCWP VRGVA
Sbjct: 174 RTEKPMLKAGNAYHKYRVKRNCWPKVRGVA 203
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/32 (81%), Positives = 26/32 (81%)
Frame = +2
Query: 44 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSL 139
MGRVIRAQRKGAGSVF SHT RKG K RSL
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSL 32
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPG 203
R+G A F + ER+GY+KGVV +IIHDPG
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVVTEIIHDPG 53
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 55.2 bits (127), Expect = 4e-08
Identities = 36/106 (33%), Positives = 57/106 (53%)
Frame = +1
Query: 337 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 516
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 517 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
+ + R +G V+ K + KAG++ ++ R P VRGVA
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVA 158
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 55.2 bits (127), Expect = 4e-08
Identities = 36/106 (33%), Positives = 57/106 (53%)
Frame = +1
Query: 337 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 516
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 517 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
+ + R +G V+ K + KAG++ ++ R P VRGVA
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVA 158
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -1
Query: 396 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWIAEVYNS 220
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFILH-ETC 420
Query: 219 QRCTSXQGHGLYP*QLP*CIHDVQR 145
+ H L P L H +QR
Sbjct: 421 ANLPMKKRHFLSPQPLTLSYHRLQR 445
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 487 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 654
+ LP +KK + S R M+G +A G + K K +KRN W VRGVA
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVA 426
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +1
Query: 343 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 510
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 511 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 606
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -1
Query: 606 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 430
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 429 TCQTTSITHF-LFKIAHNGTLRHSSN 355
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 555 WRWTY*QTYFESWKGIPQVQG 617
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At5g20050.1 68418.m02387 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 452
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 257 VLNLYGSRKCTTAKGAPLXRVMDYILNNSLDV 162
++ LYG T+A P V DYI+N+SLD+
Sbjct: 158 LVRLYGYSSSTSAN-RPRFLVYDYIVNSSLDI 188
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 348 HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWIAEVYNSQRCTSXQGHG 190
H+ KS LS +L+ +E + +E L + W+AE N + C G+G
Sbjct: 99 HLVCAKSPPLSLQPQLSSIENYKVHEHPLKPFKTAWLAETGNCKGCNYIIGNG 151
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 611 YLWYALPAFKIGL 573
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 447 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 334
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -2
Query: 554 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 375
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 374 PSGIAPTGITFPTSRVAFF 318
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,128
Number of Sequences: 28952
Number of extensions: 330953
Number of successful extensions: 895
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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