Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D03
(348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 44 9e-06
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 36 0.002
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 32 0.022
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 1.9
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 25 3.4
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 3.4
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 4.4
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 24 7.8
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 24 7.8
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 24 7.8
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 43.6 bits (98), Expect = 9e-06
Identities = 26/91 (28%), Positives = 46/91 (50%)
Frame = +1
Query: 19 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFK 198
V+ PN L R Q P F + + K+D+++YL+ +Y + VV V+++I GK
Sbjct: 10 VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68
Query: 199 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 291
++ + G V + K V + + F YP+
Sbjct: 69 RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 35.9 bits (79), Expect = 0.002
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 76 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 213
N + FH ++ K+ IKN ++K+Y V V + T I KK VK
Sbjct: 79 NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 32.3 bits (70), Expect = 0.022
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 76 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 213
N + FH ++ K+ IK + K+Y V V + T I KK VK
Sbjct: 79 NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 1.9
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Frame = +1
Query: 97 SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIK-------EDDVKVAFV 255
S+E ++K + ++ + T +N + KK+ K +++K EDD+
Sbjct: 297 SVEDDSLELKEITPEALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELE 356
Query: 256 TLPKTMTFKYPDLFEKSINEEEEH 327
K T ++ + ++EE EH
Sbjct: 357 IEVKPKTTALDNIEKSKLSEENEH 380
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 52 RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 159
RP ++LP ++ SM T + + +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 28 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV 153
P+ + LV +P+ +PN+ +++ +YDI L Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 160 VDVRTKINMGKFKKDVVKGYVIKEDDVKVA 249
V+ R ++N+G V K Y IKED K A
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPA 292
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 118 DIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDD 237
D+KN +E + +DVR + G + + K + E D
Sbjct: 306 DLKNLIETSPHITFLDVREPVQFGICRLPLFKNIPLSEVD 345
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 23.8 bits (49), Expect = 7.8
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 100 MEMTKYDI-KNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKED 234
M + +Y+ K+Y EK YE + +R ++ + D+++ ++KE+
Sbjct: 362 MAVKEYESEKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEE 407
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +1
Query: 208 VKGYVI-KEDDVKVAFVTL 261
V G+++ KEDDV+++F TL
Sbjct: 455 VSGWMLSKEDDVRLSFATL 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,036
Number of Sequences: 5004
Number of extensions: 20442
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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