Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D03
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0070 + 13045122-13045715 36 0.012
05_07_0307 - 29111643-29112104,29112222-29113214 28 1.8
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 2.3
04_01_0277 + 3681869-3681922,3681946-3682004,3683011-3683631,368... 26 7.1
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 26 7.1
11_06_0095 - 20030237-20031711,20031731-20033057 26 9.3
>07_03_0070 + 13045122-13045715
Length = 197
Score = 35.5 bits (78), Expect = 0.012
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 19 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 192
+ N +KL+ P P L ++ F +K DI+ LE +Y V +VRT +NM +
Sbjct: 10 IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66
Query: 193 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLF 297
KK ++ + D K A+VTL + PDLF
Sbjct: 67 GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLF 100
>05_07_0307 - 29111643-29112104,29112222-29113214
Length = 484
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Frame = +1
Query: 1 GNPQLXVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVR 171
G ++ VF N+ +L + P ++ +H +C+ E + NY Y V ++
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408
Query: 172 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKS 336
I V +++ DD+ VA + L + + K D E ++ + ++
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASETKAESKDANKQT 463
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 10 QLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 123
+L VF P W ++ H ++ NI+ +E+ DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584
>04_01_0277 +
3681869-3681922,3681946-3682004,3683011-3683631,
3683718-3684147
Length = 387
Score = 26.2 bits (55), Expect = 7.1
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 76 NIVHFHCSMEMTKYDIKNYLEK------IYEVPVVDVRTKINMGKFKKDVVKGYVIKE-D 234
N+V+ + S+ K D+KN LEK +Y V + K+ + + + G ++K+ +
Sbjct: 69 NLVYQNISLSNEKDDLKNQLEKKRRAVSVYLGKVSTLEYKVQELENQNTKLSGELVKQRE 128
Query: 235 DVKVAFVTLPKTMTFKYPDLFEKSINEEEE 324
D++ A + Y L +K I +EE
Sbjct: 129 DMRKAGLMFMNAAD-TYQQLAKKQIRTKEE 157
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 26.2 bits (55), Expect = 7.1
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Frame = +1
Query: 91 HCSMEMTKYDIKNYLE----KIYEVPVVD---VRTKINMGKFKKDVVKGYVIKEDDVKVA 249
H ++E K D K +E KI EVPVVD V K +D + + K +D++
Sbjct: 1186 HAAIEKEKEDAKLAIEQAPPKIVEVPVVDNAKVELLTRQNKELEDELVTFRTKAEDLEKR 1245
Query: 250 FVTLPKTMTFKYPDLFEK--SINEEEEHAKSL 339
+ + K ++ EK +N+ +E + L
Sbjct: 1246 LLEVQKESDELSREILEKDSKLNQLQEMIERL 1277
>11_06_0095 - 20030237-20031711,20031731-20033057
Length = 933
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 106 MTKYDIKNYLEKIYEVPVVDVR 171
+++ DI+N KIYE+ V DVR
Sbjct: 57 LSRMDIRNRNNKIYEIWVEDVR 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,289,863
Number of Sequences: 37544
Number of extensions: 111331
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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