Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D01
         (507 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    29   0.018
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    28   0.042
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    24   0.68 
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    24   0.68 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 0.018
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
 Frame = +3

Query: 165 KKIKEWQNLPPGPW--GLPIVGYLPFIDRYHPHITLTNLSK--TYGAIYGLKMGSIYAVV 332
           KK + W+ L P P     PI+G L  I R    + L +  +   Y  IY L +     V 
Sbjct: 22  KKGRFWECLAPIPQPPAYPIIGNLFDIMRTPEQMFLADRERGLKYYPIYKLDVCGTGGVN 81

Query: 333 LSDHKLVRDAFSKDSFSGRAPLY-LTHGLMNGNGIICAEGGLWRDXRKLIT 482
           L + + V    +    + ++ +Y   H  + G G++ + G  W++ RK++T
Sbjct: 82  LLNPEDVELVLTDTKQNTKSFIYHFLHSWL-GTGLLTSRGPKWQNRRKILT 131


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 0.042
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
 Frame = +3

Query: 165 KKIKEWQNLPPGPW--GLPIVGYLPFIDRYHPHITLTNLSK--TYGAIYGLKMGSIYAVV 332
           KK + W+ L P P     PI+G L  I R    + L    +   Y  IY L +     V 
Sbjct: 22  KKGRFWECLAPIPQPPAYPIIGNLFDIMRTPEQLFLAERERGLKYYPIYKLDVCGNGGVN 81

Query: 333 LSDHKLVRDAFSKDSFSGRAPLY-LTHGLMNGNGIICAEGGLWRDXRKLIT 482
           L + + V    +    + ++ +Y   H  + G G++ + G  W++ RK++T
Sbjct: 82  LLNPEDVELVLTDTKQNTKSFIYHFLHSWL-GTGLLTSAGPKWQNRRKILT 131


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +3

Query: 264 LTNLSKTYGAIYGLKMGSIYAVVLSDHKLVRDAFSKDSFSGRAPLY-LTHGLMNGNGIIC 440
           L    + Y  IY L    + A  +   +      S  +   ++ +Y L H  + G G++ 
Sbjct: 66  LREWGRLYYPIYKLNAAHLAAANILSPEDCELVLSNPTHMEKSAIYNLLHDWL-GTGLLT 124

Query: 441 AEGGLWRDXRKLIT 482
           + G  W+  RK++T
Sbjct: 125 STGLKWQTRRKILT 138


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +3

Query: 264 LTNLSKTYGAIYGLKMGSIYAVVLSDHKLVRDAFSKDSFSGRAPLY-LTHGLMNGNGIIC 440
           L    + Y  IY L    + A  +   +      S  +   ++ +Y L H  + G G++ 
Sbjct: 66  LREWGRLYYPIYKLNAAHLAAANILSPEDCELVLSNPTHMEKSAIYNLLHDWL-GTGLLT 124

Query: 441 AEGGLWRDXRKLIT 482
           + G  W+  RK++T
Sbjct: 125 STGLKWQTRRKILT 138


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +3

Query: 300 GLKMGSIYAVVLSDHKLVRDAFSKDSFSGRAPLYLTHGLMNGNGIICAEGGLWRDXRKLI 479
           GL  G+   ++ + + LV    S  S +G      ++GL +        GG+    R+  
Sbjct: 44  GLPAGAGSNLLCASNGLVTTLASGSSLNGLTNNVPSNGLSSSGPFSSIGGGISASKRQRT 103

Query: 480 TSWLKS 497
             WL S
Sbjct: 104 DDWLSS 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,592
Number of Sequences: 336
Number of extensions: 3297
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)