Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C22
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           218   2e-57
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   218   2e-57
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   218   2e-57
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    32   0.21 
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00...    29   2.0  
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    29   2.0  
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,...    29   2.6  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.4  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  218 bits (532), Expect = 2e-57
 Identities = 92/130 (70%), Positives = 118/130 (90%)
 Frame = +2

Query: 59  NDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 238
           N++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++
Sbjct: 6   NEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEID 65

Query: 239 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 418
            ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 66  NLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 125

Query: 419 YWGLRVRGQH 448
           YWGLRVRGQH
Sbjct: 126 YWGLRVRGQH 135


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  218 bits (532), Expect = 2e-57
 Identities = 92/130 (70%), Positives = 118/130 (90%)
 Frame = +2

Query: 59  NDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 238
           N++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++
Sbjct: 6   NEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEID 65

Query: 239 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 418
            ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 66  NLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 125

Query: 419 YWGLRVRGQH 448
           YWGLRVRGQH
Sbjct: 126 YWGLRVRGQH 135


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  218 bits (532), Expect = 2e-57
 Identities = 92/130 (70%), Positives = 118/130 (90%)
 Frame = +2

Query: 59  NDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 238
           N++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++
Sbjct: 6   NEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEID 65

Query: 239 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 418
            ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 66  NLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 125

Query: 419 YWGLRVRGQH 448
           YWGLRVRGQH
Sbjct: 126 YWGLRVRGQH 135


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 374 LERLKKIRAHRGMRHYWGLRVRGQ 445
           ++RLK+I+ +RG+RH  GL  RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145


>At5g49610.1 68418.m06139 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (gb|AAF30317.1)
          Length = 359

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 417 ITGAF-VCVVSTLRLLAGEEELLVYQRRSKLNK*KIQLK 530
           + G F +C       LA  +++LVYQRRSKL K    +K
Sbjct: 299 VPGIFPICQTGEYVFLATHKQVLVYQRRSKLWKEMFSVK 337


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 241 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 146
           FFNLFF A     +KI +G F  ++ +PP+++
Sbjct: 34  FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64


>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
           putative similar to putative 30S ribosomal protein S13,
           chloroplast precursor GB:P42732 [Arabidopsis thaliana]
          Length = 154

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 350 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 445
           L  ++  +++RL ++  +RG RH  GL  RGQ
Sbjct: 98  LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 320 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 415
           G YS +   NLD+     L+R+KK+ A  G R
Sbjct: 26  GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,312
Number of Sequences: 28952
Number of extensions: 231158
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)