Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C21
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)             29   3.2  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 28   5.6  
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)                28   7.4  
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)               28   7.4  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        28   7.4  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           27   9.8  

>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 40/94 (42%), Positives = 60/94 (63%)
 Frame = +3

Query: 186 PGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEK 365
           P  GV RQ I +  L LT F++K   +A +  V+KA+  A++ +KW ++ WA+KLA ++K
Sbjct: 249 PHGGVCRQAINMKHLSLTDFKIKIGRSARSGPVKKAFEAAQVQDKWEQTAWARKLAMRKK 308

Query: 366 RAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 467
           RA + D+DRFKL  A+ K+NR      K LK +A
Sbjct: 309 RATLNDFDRFKLKLAKQKKNRLLRTEVKKLKKEA 342


>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 259 AYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 131
           AY+ R++  WS+ K  C +  P+   S S  + +IT  TL  +
Sbjct: 87  AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 102 ALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR-LNQLHLTKF 245
           +L+ D  L  + VS VDV   + A+VD P +   RQ ++ ++  H   F
Sbjct: 70  SLIGDYDLFAREVSTVDVRIASHAIVDRPRASWKRQSLKGISNFHFLAF 118


>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 280 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 182
           +RV   +AY   N + W W++R+   G  + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154


>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 280 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 182
           +RV   +AY   N + W W++R+   G  + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -1

Query: 295  HAFLTRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNFPFKGP 116
            HA++T   G V  YL  + V +S +     +G P+   + S   WS    T    P  GP
Sbjct: 1194 HAYITFPRGKVGRYLEGDMVYFSCYNGYFLVGIPVIKCNKS---WSKVEFTCNPVPC-GP 1249

Query: 115  SATRATRPGSTYRAKGMTFLQR 50
                A   G +  + G TF QR
Sbjct: 1250 LPLPAR--GGSASSTGTTFSQR 1269


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 160 TKLVHWLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLLVS*GK 291
           T L+   MDP+V  LG+R      + ++S+  T  +  L+S GK
Sbjct: 265 TVLLSKFMDPSVHNLGSRVTARRVVQESSSRTTPIRQALLSVGK 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,498
Number of Sequences: 59808
Number of extensions: 418017
Number of successful extensions: 1191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)