Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C19
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.39 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   6.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.5  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 206 ILDKFMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSL 93
           + +  +K  + + +K + R+CFKQ  E+Y ++ K   L
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLKFKLL 564


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 468 ILSTCTFNLLKIMRMVYLLLKHLFV 542
           ILS    N+ ++   VY LL+HLF+
Sbjct: 263 ILSMLELNVSEVTASVYRLLRHLFL 287


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 435 WKILRESLDTRILSTCTFNLLKIMR 509
           WKIL    DTRI  T   NLL++ R
Sbjct: 579 WKILNAKDDTRI-GTTNSNLLRLKR 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,651
Number of Sequences: 5004
Number of extensions: 39931
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)