Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C17
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    62   2e-11
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    61   6e-11
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   4.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    24   6.1  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    24   8.0  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    24   8.0  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   8.0  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 62.1 bits (144), Expect = 2e-11
 Identities = 34/92 (36%), Positives = 51/92 (55%)
 Frame = +1

Query: 31  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAP  P    +     
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSH 306
           +  I+    + GV  + K++GG    G+ PSH
Sbjct: 61  ARHIYLRKQV-GVGRLCKVYGGSVNRGMRPSH 91


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 60.9 bits (141), Expect = 6e-11
 Identities = 33/92 (35%), Positives = 51/92 (55%)
 Frame = +1

Query: 31  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAP  P    +     
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSH 306
           +  I+    + GV  + K++GG    G+ PSH
Sbjct: 61  ARHIYLRKQV-GVGRLCKVYGGSVNRGMRPSH 91


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 267 DLGDSLDSXQVSECKYDEGWQHNA 196
           + GDS +  ++ +C+  +GW H A
Sbjct: 338 ECGDSTEDSEMFQCERCDGWVHCA 361


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 49  KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 162
           +D E DKI ++V  HL K  K +  +   L K    KE
Sbjct: 85  EDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = -1

Query: 210 WQHNAHRTNXGSXRSQLFEASCLYKIHVLRYLDFARFF*VSSDSFNNLVLFNILYCDGTH 31
           W+      +     + L EAS LY  ++  + DF R +  S D      LF   +    H
Sbjct: 182 WKRILRELSIPFTNASLKEASDLYLRYIFPFEDFVRKYQTSEDQCFETDLFPKFFTKDEH 241


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 25  GKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 150
           G+ + V   D+E +K+++    HL     +K+   +D++ TA
Sbjct: 224 GEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 188 VLCALCCHPSSYLHSLTXLESRLSPRSLVGANVMELHLH 304
           V C L  +PS YLH ++  E +    + V A  +E+  H
Sbjct: 68  VFCILYAYPSVYLHYVSE-EPKKKLENPVSAIKIEMKFH 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,636
Number of Sequences: 5004
Number of extensions: 23502
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)