Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C17
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    80   6e-16
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   1.9  
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120...    26   7.6  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 79.8 bits (188), Expect = 6e-16
 Identities = 42/91 (46%), Positives = 57/91 (62%)
 Frame = +1

Query: 43  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLPSFVI 222
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL P  P          +  I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 223 FTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
           +    + GV    KI+GGR+RNG  P HFC+
Sbjct: 68  YLRQGI-GVGGFQKIYGGRQRNGSRPPHFCK 97


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 150 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 28
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


>03_03_0001 +
           13611070-13611172,13611812-13611873,13612001-13612072,
           13612158-13612394,13612473-13612650,13612731-13612863,
           13613686-13613845,13613925-13614078,13614159-13614262,
           13614354-13614512,13615399-13615467,13615543-13615611,
           13615772-13615909,13616044-13616124,13616805-13616933,
           13617717-13617864,13618007-13618017,13618094-13618234,
           13618314-13618439,13619164-13619220,13619355-13619453,
           13619540-13619762,13620236-13620480,13621325-13621438
          Length = 1003

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 170 RYDPXLVLCALCCHPSSYLHSLTXLESRLSP 262
           R D  L L   C HP  Y H L  + S LSP
Sbjct: 550 RVDLGLPLGIQCPHPYPYPHYLGRVSSNLSP 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,104,271
Number of Sequences: 37544
Number of extensions: 158953
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)