Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C17
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          38   3e-04
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        27   3.4  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        26   7.8  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 37.5 bits (83), Expect(2) = 3e-04
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 103 TGKVKVPEHMDLVKTARFKELAPX*P 180
           +G +K+P+ +DLVKT +FKELAP  P
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDP 27



 Score = 22.6 bits (46), Expect(2) = 3e-04
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 265 IFGGRKRNGVTPSHF 309
           I  GRK  G  PSHF
Sbjct: 32  IRAGRKNRGSAPSHF 46


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDS 149
           C   QDC + RC  +KNG  + T A G CK S
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGS 331


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 214 FVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCRVIRQYCTQXLCN 351
           FV  T  H    + +T+ F  +   G  P  FCR +    T+ +C+
Sbjct: 163 FVTNTHHHRFSSRALTRPFCFKNTTGTKPKFFCRPLNVPETKHICS 208


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 258  DSLDSXQVSECKYDEGWQHNAHRTNXG 178
            DS+   +V+ CK +E W  + H T  G
Sbjct: 996  DSVSGKEVTSCKKNETWIADCHFTRDG 1022


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,287
Number of Sequences: 59808
Number of extensions: 187573
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)