Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C17
(357 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 83 2e-16
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 83 2e-16
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 83 2e-16
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 83 2e-16
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 83 2e-16
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 82 6e-16
Z97055-5|CAB09789.1| 429|Homo sapiens protein ( Human DNA seque... 30 2.4
BC104843-1|AAI04844.1| 429|Homo sapiens patatin-like phospholip... 30 2.4
BC104839-1|AAI04840.1| 429|Homo sapiens patatin-like phospholip... 30 2.4
BC031820-1|AAH31820.1| 429|Homo sapiens patatin-like phospholip... 30 2.4
AK127172-1|BAC86866.1| 315|Homo sapiens protein ( Homo sapiens ... 30 2.4
AF460563-1|AAM87934.1| 68|Homo sapiens immunoglobulin heavy ch... 29 5.6
BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 28 9.8
BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 28 9.8
BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 28 9.8
AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein ... 28 9.8
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +1
Query: 31 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
+ ++ GV ++TKI+GGR+RNGV PSHF R
Sbjct: 61 ARHLYLRGG-AGVGSMTKIYGGRQRNGVMPSHFSR 94
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIR 233
WFY R A+ RH+Y+R
Sbjct: 52 WFYTRAASTARHLYLR 67
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +1
Query: 31 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
+ ++ GV ++TKI+GGR+RNGV PSHF R
Sbjct: 61 ARHLYLRGG-AGVGSMTKIYGGRQRNGVMPSHFSR 94
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIR 233
WFY R A+ RH+Y+R
Sbjct: 52 WFYTRAASTARHLYLR 67
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +1
Query: 31 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
+ ++ GV ++TKI+GGR+RNGV PSHF R
Sbjct: 61 ARHLYLRGG-AGVGSMTKIYGGRQRNGVMPSHFSR 94
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIR 233
WFY R A+ RH+Y+R
Sbjct: 52 WFYTRAASTARHLYLR 67
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +1
Query: 31 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
+ ++ GV ++TKI+GGR+RNGV PSHF R
Sbjct: 61 ARHLYLRGG-AGVGSMTKIYGGRQRNGVMPSHFSR 94
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIR 233
WFY R A+ RH+Y+R
Sbjct: 52 WFYTRAASTARHLYLR 67
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +1
Query: 31 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLP 210
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
+ ++ GV ++TKI+GGR+RNGV PSHF R
Sbjct: 61 ARHLYLRGG-AGVGSMTKIYGGRQRNGVMPSHFSR 94
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIR 233
WFY R A+ RH+Y+R
Sbjct: 52 WFYTRAASTARHLYLR 67
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 81.8 bits (193), Expect = 6e-16
Identities = 45/92 (48%), Positives = 59/92 (64%)
Frame = +1
Query: 40 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLPSFV 219
VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP +
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 75
Query: 220 IFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
++ GV ++TKI+GGR+RNGV PSHF R
Sbjct: 76 LYLRGG-AGVGSMTKIYGGRQRNGVMPSHFSR 106
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 186 WFYVRCAAILRHIYIR 233
WFY R A+ RH+Y+R
Sbjct: 64 WFYTRAASTARHLYLR 79
>Z97055-5|CAB09789.1| 429|Homo sapiens protein ( Human DNA sequence
from clone RP3-388M5 on chromosome 22. ).
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 162 AGSXMTLXWFYVRCAAILRHIYIRSPX---WSQDCHQDLWWAQ 281
+G L + + C +IY RS W D DLWW Q
Sbjct: 335 SGPGQVLTYLLLPCTLPFEYIYFRSRRLVVWLPDVPADLWWMQ 377
>BC104843-1|AAI04844.1| 429|Homo sapiens patatin-like phospholipase
domain containing 5 protein.
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 162 AGSXMTLXWFYVRCAAILRHIYIRSPX---WSQDCHQDLWWAQ 281
+G L + + C +IY RS W D DLWW Q
Sbjct: 335 SGPGQVLTYLLLPCTLPFEYIYFRSRRLVVWLPDVPADLWWMQ 377
>BC104839-1|AAI04840.1| 429|Homo sapiens patatin-like phospholipase
domain containing 5 protein.
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 162 AGSXMTLXWFYVRCAAILRHIYIRSPX---WSQDCHQDLWWAQ 281
+G L + + C +IY RS W D DLWW Q
Sbjct: 335 SGPGQVLTYLLLPCTLPFEYIYFRSRRLVVWLPDVPADLWWMQ 377
>BC031820-1|AAH31820.1| 429|Homo sapiens patatin-like phospholipase
domain containing 5 protein.
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 162 AGSXMTLXWFYVRCAAILRHIYIRSPX---WSQDCHQDLWWAQ 281
+G L + + C +IY RS W D DLWW Q
Sbjct: 335 SGPGQVLTYLLLPCTLPFEYIYFRSRRLVVWLPDVPADLWWMQ 377
>AK127172-1|BAC86866.1| 315|Homo sapiens protein ( Homo sapiens
cDNA FLJ45237 fis, clone BRCAN2028702. ).
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 162 AGSXMTLXWFYVRCAAILRHIYIRSPX---WSQDCHQDLWWAQ 281
+G L + + C +IY RS W D DLWW Q
Sbjct: 221 SGPGQVLTYLLLPCTLPFEYIYFRSRRLVVWLPDVPADLWWMQ 263
>AF460563-1|AAM87934.1| 68|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 68
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 277 RKRNGVTPSHFCRVIRQYCTQXLCNRW 357
R R+ T ++C + +YCT +C W
Sbjct: 36 RLRSDDTAVYYCARVERYCTNGICYNW 62
>BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 10 RLSTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 150
++ T G ++V V D ++I+ T+ H KK V DLV +A
Sbjct: 236 KILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
>BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 10 RLSTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 150
++ T G ++V V D ++I+ T+ H KK V DLV +A
Sbjct: 236 KILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
>BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 10 RLSTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 150
++ T G ++V V D ++I+ T+ H KK V DLV +A
Sbjct: 236 KILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
>AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein
NMP200 protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 10 RLSTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 150
++ T G ++V V D ++I+ T+ H KK V DLV +A
Sbjct: 236 KILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,891,852
Number of Sequences: 237096
Number of extensions: 921467
Number of successful extensions: 1721
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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