Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C17
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    73   4e-14
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    73   4e-14
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z93388-14|CAN86927.1|  226|Caenorhabditis elegans Hypothetical p...    26   8.9  
Z93388-13|CAB07666.1|  383|Caenorhabditis elegans Hypothetical p...    26   8.9  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +1

Query: 34  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P-XIGSMCVVLP 210
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP  P    +    L 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHF 309
             + F  A   G+    K++GG KR GV P+HF
Sbjct: 63  RHLYFRPA---GIGAFKKVYGGNKRRGVAPNHF 92


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +1

Query: 34  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P-XIGSMCVVLP 210
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP  P    +    L 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 211 SFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHF 309
             + F  A   G+    K++GG KR GV P+HF
Sbjct: 63  RHLYFRPA---GIGAFKKVYGGNKRRGVAPNHF 92


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 218 SYLHSLTXLESRLSPRSLVGANVMEL 295
           S  H    + SRLSPRS +G N+ E+
Sbjct: 67  STFHPEKYISSRLSPRSRLGNNIFEM 92


>Z93388-14|CAN86927.1|  226|Caenorhabditis elegans Hypothetical
           protein T10C6.10b protein.
          Length = 226

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 155 KRAVFTRSMCSGTLTLPVFFK*AATVLTILSCSTSFTVTERILPCVD 15
           KRAVF R++  G L LP+ +       T   CST     E + PC+D
Sbjct: 99  KRAVFNRTVKFGDLRLPMKY----DPKTRYHCSTDI-YEECLQPCLD 140


>Z93388-13|CAB07666.1|  383|Caenorhabditis elegans Hypothetical
           protein T10C6.10a protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 155 KRAVFTRSMCSGTLTLPVFFK*AATVLTILSCSTSFTVTERILPCVD 15
           KRAVF R++  G L LP+ +       T   CST     E + PC+D
Sbjct: 99  KRAVFNRTVKFGDLRLPMKY----DPKTRYHCSTDI-YEECLQPCLD 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,742,824
Number of Sequences: 27780
Number of extensions: 139327
Number of successful extensions: 382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)