Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C17
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...    75   1e-14
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...    75   1e-14
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...    74   2e-14
At3g49055.1 68416.m05359 hypothetical protein                          31   0.30 
At5g16500.1 68418.m01928 protein kinase family protein contains ...    27   3.7  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    27   4.9  
At4g03420.1 68417.m00469 expressed protein                             26   8.5  
At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containi...    26   8.5  

>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 39/91 (42%), Positives = 54/91 (59%)
 Frame = +1

Query: 43  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLPSFVI 222
           TVKDV   + VK  AAHLK++GK+++P   D+VKT + KELAP  P    +     +  +
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 223 FTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
           +    L GV    +I+GG KRNG  P HFC+
Sbjct: 66  YLRGGL-GVGAFRRIYGGSKRNGSRPPHFCK 95


>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 40/91 (43%), Positives = 53/91 (58%)
 Frame = +1

Query: 43  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLPSFVI 222
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAP  P    +     +  I
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65

Query: 223 FTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
           +    L GV    +I+GG KRNG  P HFC+
Sbjct: 66  YLRGGL-GVGAFRRIYGGSKRNGSRPPHFCK 95


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 38/91 (41%), Positives = 53/91 (58%)
 Frame = +1

Query: 43  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*PXIGSMCVVLPSFVI 222
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAP  P    +     +  +
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 223 FTFAHLXGVKTVTKIFGGRKRNGVTPSHFCR 315
           +    L GV    +I+GG KRNG  P HFC+
Sbjct: 66  YLRGGL-GVGAFRRIYGGSKRNGSRPPHFCK 95


>At3g49055.1 68416.m05359 hypothetical protein
          Length = 480

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 270 KDLGDSLDSXQVSECKYD-EGWQHNAHRTNXGSXRSQLFEAS 148
           KD G +     +S+  +D   W H++  +N  S RSQ+FEAS
Sbjct: 4   KDTGINRSDTPISDQDHDFRQWNHSSLDSNFLSLRSQIFEAS 45


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 52  DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 168
           +VE D+    V A  K+T + +  E    VKT  F+ELA
Sbjct: 30  NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 208 PSFVIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCRVIRQYCTQ 339
           P+F   T   + G++    +  G   N VTP   C+++R+ C +
Sbjct: 22  PAFETTTDHAVMGIRRHVAVPPGTTLNTVTPCAACKLLRRRCAE 65


>At4g03420.1 68417.m00469 expressed protein
          Length = 310

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 258 DSLDSXQVSECKYDEGWQHNA--H-RTNXGSXRSQLFEASCLY 139
           D  +S ++S C  DEG +H+A  H     G    Q FE S  Y
Sbjct: 119 DESESDKLSRCASDEGLEHDALLHPNDRLGYLYLQYFERSAPY 161


>At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 471

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 93  LKKNGQSQGT*AHGSCKDSSLQRA 164
           +K  G + GT  HG CKDS ++ A
Sbjct: 183 VKPTGVTFGTLIHGLCKDSRVKEA 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,248,330
Number of Sequences: 28952
Number of extensions: 126514
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)