Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C14
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    32   0.054
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.5  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.7  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   4.7  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   6.2  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.2  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 299 TKLLSHPLEPRRDRCVLLEQRLLSSERVIRKWIQ 198
           +KL+S P  P R RC LLE     +E     W+Q
Sbjct: 494 SKLVSEPEPPIRSRCALLENMFNPAEETSPNWVQ 527


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 66   NKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPL 242
            +KI+ ++  +     +K  P    + H++S    + L++  SI N+ P     F  KEP 
Sbjct: 919  DKIRVRVLGIHDSRNHKFLP----ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQ 969

Query: 243  FEKDASVPARFQRMREEFCKIGMRRSVEG 329
            F+K   V      + +E   + +  SV G
Sbjct: 970  FKKGDEVTGFVNNVSKECVWVSLTPSVNG 998


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 390 TPCRVAVTAHEV--DHVHVLITHLQLTFSFRFYKTPLASSGTSP 265
           TPC     A     D    LIT++Q+  S   YK+P A    +P
Sbjct: 544 TPCNSEEEARSYFKDGTDSLITNIQIRTSLNRYKSPQAPQNVNP 587


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARF-QRMREEFCKIG 308
           P L+ +    P+  +  NRS+  +  ++YT  +   ++E +   PAR    + +EF ++ 
Sbjct: 77  PMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLN 136

Query: 309 MRRSVEG 329
           ++ S  G
Sbjct: 137 LQCSACG 143


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 144 HQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIG 308
           H IS + ++ +   R+  L  L+     +  PLF++D S    ++   E+ C IG
Sbjct: 389 HHISGS-AVRMAEERNTTLDKLSVSDLQSLHPLFDEDVSKVFNYEESVEKRCSIG 442


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 102 PPGNKQWPARPGLQHQISQNPSMNLTLNRSI 194
           PPG+  W A+P       ++PS   TL + I
Sbjct: 68  PPGSPYWEAKPVSHTVFLESPSDVFTLEKPI 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,383
Number of Sequences: 5004
Number of extensions: 45154
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)