Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C14
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.8  
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)                       28   6.4  

>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1774

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 371 TATRHGVFQVARWRTEPWRG 430
           TA   GVF + RWRT P+ G
Sbjct: 178 TALSSGVFNIIRWRTSPFGG 197


>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 102 PPGNKQWPARPGLQHQISQNPSMNLTLNRSIN-LYPLTN 215
           PPG    PAR  L+H  ++N  + L  NR    L P  N
Sbjct: 327 PPGMTPRPARSNLEHDYNKNTDLLLQANRGCEFLAPCEN 365


>SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
 Frame = +3

Query: 141  QHQISQNPSMNLTLNRSINLY-----PLTNYTF-GTKEPLFEKDASVPARFQRMREEFCK 302
            ++ + +NP M+L+   +  +      PL   TF GT + L      + A F  +R+E   
Sbjct: 860  KNDVIKNPEMDLSEAAAAAIIDPVASPLLAKTFRGTPQTLL-----ITAEFDPLRDEGFL 914

Query: 303  IGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGE---LNPGEDXIDGLKRLLT 461
               R  + GV LVH+H       L L +  F  P       N   D ID L+RL T
Sbjct: 915  YAERIKLAGVELVHKHYFSFHGFLTLTSEPFPHPFSTEEGRNGTRDVIDFLQRLKT 970


>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
          Length = 719

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 75  KYKMAAVQGPPGNKQ---WPARPGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLF 245
           K K+ +   PP +K    W   P  + Q+  N + NL   + IN Y +T  TF   +PLF
Sbjct: 386 KSKLHSFPPPPRDKSKEVWVPLPSPE-QLRTNDTENLRFMQ-IN-YTITRMTFDPPKPLF 442

Query: 246 EK 251
           +K
Sbjct: 443 DK 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,330
Number of Sequences: 59808
Number of extensions: 343812
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)