Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C11
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 28 1.0
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 26 4.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.1
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 26 4.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 5.5
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 5.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 5.5
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 5.5
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 5.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 5.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 5.5
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 9.5
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 25 9.5
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.5
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 9.5
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 446 DSIEKSTVESTLQKENSSQTEKTVLN-ITDDKGENDKDNTLEDNEKTKKPSKSITDSST 619
+S +S L + NS+ N TDD GE++ TL +N K +P S+ ++
Sbjct: 480 NSSSQSLGNEVLSRPNSNSNSAESRNGETDDSGESETYFTLMNNNKGVEPRASVASETS 538
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTE-----KTVLNITDDKGENDKDNTLE--DNEKTKKPSK 598
+D I + T+E++LQKE +S + KT N T+ K E D + D PSK
Sbjct: 45 NDRISR-TIENSLQKETNSDNKIKKLSKTKSNPTNPKSEEDPSQICQSFDESNIITPSK 102
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGEN---DKDNTLEDNEKTKKPSKSITD 610
+S+ + S+ S+ + E+SS+ + + +D + E+ D D++ ++ + S +D
Sbjct: 212 SSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSD 271
Query: 611 SST 619
SS+
Sbjct: 272 SSS 274
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGEN---DKDNTLEDNEKTKKPSKSITD 610
+S+ + S+ S+ + E+SS+ + + +D + E+ D D++ ++ + S +D
Sbjct: 158 SSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD 217
Query: 611 SST 619
SS+
Sbjct: 218 SSS 220
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 593 RVSLFFHYLQVYYPYHFHPYH 531
++ +F HYL YY H H H
Sbjct: 229 QLKMFVHYLPSYYHLHVHILH 249
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 343 QIEDTTSVEDINNDKIQNVQDVKTTSQTLECT 438
++ +TTS+E+ N D + V + +QTLE T
Sbjct: 393 EVIETTSLEEKNVDNQEFVTSISNGNQTLEDT 424
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 446 DSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWG 625
D +++ + ++++ SS+ KT +N D+ N + NT K P K WG
Sbjct: 53 DLLQRRVLPISVRRILSSR--KTFVNYLDET-PNSRYNTCVAKPSYKPPRKFCNVCGYWG 109
Query: 626 EYA 634
+YA
Sbjct: 110 KYA 112
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 461 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 619
+TVE NSS V N + +ND DN DN++ + + +++T
Sbjct: 501 ATVERKEGGSNSSSNISNVANFDSAEDDNDNDN---DNDRDSNNNNNNNNTNT 550
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +2
Query: 482 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSS 616
+KE++ + + N D+ E + ++++K + PSKS+ + S
Sbjct: 15 EKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEIS 59
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 461 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
ST+ S + ++ + +T+L +T +N+ + +E TKK + D
Sbjct: 683 STINSKISEKQENNVAETILEVT--SSPKSSENSQKQSEITKKRGRDEED 730
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 506 EKTVLNITDDKGENDKDNTLEDNEKTKKPS 595
E+ L+ ++ D DN+ E+N+ T +PS
Sbjct: 232 EEDYLSTDSEEFSEDSDNSSEENKDTNEPS 261
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 461 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 619
+TVE NSS V N + +ND DN DN++ + + +++T
Sbjct: 501 ATVERKEGGSNSSSNISNVANFDSAEDDNDNDN---DNDRDSNNNNNNNNTNT 550
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGEN----DK--DNTLEDNEKTKKP 592
+VP + + + ++S++ ++ S + + ++ +DK EN DK D++L N KT+
Sbjct: 508 SVPENKAEDSVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKTEGY 567
Query: 593 SKSI 604
+ S+
Sbjct: 568 TPSV 571
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLED 571
S I++S T +S T+L + GEN+ +NT +D
Sbjct: 38 SPEIQRSVYTLTGLAPSSKMAFVTMLTVRAANGENEVENTQQD 80
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKS 601
+ ST+E +L+KE + + + + + D D+ + D ++ + KS
Sbjct: 182 DASTIEKSLEKEVKTIYDSNIASPKESSDAIDADHAMIDESRSTQRRKS 230
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 467 VESTLQKENSSQTEKTVLNITDDKGENDKD 556
+ S LQ NS + T+ +ITD++ DK+
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKN 244
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 253 LDLV*PFLHLLR*NVTTLDVECVQLSVWK 167
LDL+ +HL++ NV T D C L W+
Sbjct: 1076 LDLLLFSIHLVKPNVETNDEVCNTLKAWE 1104
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 431 NVPTSDSIEKSTVES--TLQKENSSQTEKTVLNI---TDDKGENDKDNTLEDNEKTKKP 592
NV +++ + +T E+ + +++ E LN +D+GE+ KDN +DN P
Sbjct: 150 NVESTNELPSTTTEAYKLVAAHTAARLEHMRLNALKAANDEGEDVKDNEQDDNIDESDP 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,551
Number of Sequences: 5004
Number of extensions: 40903
Number of successful extensions: 158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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