Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C11
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 30 1.4
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 30 1.9
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 29 4.3
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 5.6
11_06_0710 - 26492093-26493460 27 9.9
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 27 9.9
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 27 9.9
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 27 9.9
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 27 9.9
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPS 595
+ DS + S+ + K+ ++ K L+ ++ D +L D+E KKP+
Sbjct: 109 SDDSSDDSSSDDEPAKKPVARPNKAALSTNSSSSDDSSDESLSDDEPVKKPA 160
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 461 STVESTLQKENSSQTEKTVLNITDDKGENDK---DNTLEDNEKTKKPSKSITDSSTW 622
S+ E+ + ++SSQ V + D ENDK D +L+D ++ P+ S +S +
Sbjct: 698 SSKETNNESDSSSQDASPVKPLNDCSSENDKDEYDGSLQDASPSEPPNDSNCESGKY 754
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 569 LQVYYPYHFHPYHQLCSELFFQF 501
+Q Y PY+FH YH+ + LF ++
Sbjct: 205 VQQYVPYYFHHYHERITFLFERY 227
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 446 DSIEKST-VESTLQKENSSQTEKTVLNITDDKGENDKDNTL--EDNEKTKKPSKSITDS 613
D+ EKST +E+T+Q+ S TEK L +T ++ E + L E K ++ K I D+
Sbjct: 1143 DTDEKSTQLETTIQRLEESLTEKDAL-LTTERQETEATKKLLSEAQYKNEELLKKIEDA 1200
>11_06_0710 - 26492093-26493460
Length = 455
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 485 KENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGE 628
K+ SS + K K + ED+EK KK SKS + SS+ E
Sbjct: 195 KKKSSDEDNDGAKKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSDE 242
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 437 PTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKK 589
P SD+ + + + + ENS + E L ++DD D+D+ +E+ + K+
Sbjct: 229 PESDTEKAADKDKFVDSENSDEEEDDELELSDD----DEDDFVENKRQCKR 275
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 461 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASY 640
S +E + +E++ + + END D L+D+E+ S T + T G+ Y
Sbjct: 404 SQIEDSGSEESTDDETVDIKDSGFHDAENDADQELDDSERILSGKLSETSACTAGDLYDY 463
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 482 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSS 616
+K+N++ + T+ + ++D+ KD+ D E KKP S+ D++
Sbjct: 185 KKKNNTDVDVTIQSSSEDR----KDDHTIDKEDLKKPLNSLVDTA 225
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 452 IEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKK 589
I KSTV+ ++K+ + +N DKDN E+ + +K
Sbjct: 228 IHKSTVDGLMKKKKGGEQPAGSMNKNTTSAPIDKDNAREEISRLQK 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,254,410
Number of Sequences: 37544
Number of extensions: 214417
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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