Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C11
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 33 0.27
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_47950| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_646| Best HMM Match : MGAT2 (HMM E-Value=2.1) 29 2.5
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29) 29 4.4
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_34536| Best HMM Match : DUF680 (HMM E-Value=2.1) 29 4.4
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 4.4
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015) 29 4.4
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 29 4.4
SB_54210| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0) 28 5.8
SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0) 28 7.6
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT--DDKGENDKDNTLEDNEKTKKPSKSI 604
N PTSD+ S ++T + +S E T N T D+ +D D T +++ T + S
Sbjct: 135 NDPTSDNDTTSDNDTTSDNDTTSDNETTSDNDTNSDNDTTSDNDKTTDNDTTTDNDTTSD 194
Query: 605 TDSSTWGEYASY 640
D+++ SY
Sbjct: 195 NDTTSDNNTTSY 206
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDN-TLEDNEKTKKPSKSIT 607
N TSD+ S ++T + +S + T N T + + DN T DN+KT + + +
Sbjct: 57 NNTTSDNNTTSDNDTTSDNDTTSDNDTTSDNETTSDNDTNSDNDTTSDNDKT-SDNDTTS 115
Query: 608 DSST 619
D+ T
Sbjct: 116 DNDT 119
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDN-TLEDNEKTKKPSKSIT 607
N TSD+ S +T + +S KT N T + DN T DN+ T +K+ T
Sbjct: 189 NDTTSDNDTTSDNNTTSYNDTTSDNNKTSNNNTTSDNDTTSDNDTTFDNDTTTDNNKT-T 247
Query: 608 DSST 619
D+ T
Sbjct: 248 DNDT 251
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
N T+D+ S ++T + +S + T N T + DN N T + + +D
Sbjct: 255 NDTTTDNDTTSDNDTTTNNDTNSDNDTTTSNDTTSDNDTTSDNDTTTNNDTTSDNDATSD 314
Query: 611 SST 619
+ T
Sbjct: 315 NDT 317
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDN-TLEDNEKTKKPSKSIT 607
N TSD+ S + T + +S + T N T E DN T DN+ T K+ T
Sbjct: 123 NDTTSDNNTTSYNDPTSDNDTTSDNDTTSDNDTTSDNETTSDNDTNSDNDTTSDNDKT-T 181
Query: 608 DSST 619
D+ T
Sbjct: 182 DNDT 185
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
N TSD+ + + ++T + +S + T N T + DN N T + + +D
Sbjct: 171 NDTTSDNDKTTDNDTTTDNDTTSDNDTTSDNNTTSYNDTTSDNNKTSNNNTTSDNDTTSD 230
Query: 611 SST 619
+ T
Sbjct: 231 NDT 233
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
N TSD+ S ++T + +S E T N T+ + DN + T + + +D
Sbjct: 63 NNTTSDNDTTSDNDTTSDNDTTSDNETTSDNDTNSDNDTTSDNDKTSDNDTTSDNDTTSD 122
Query: 611 SST 619
+ T
Sbjct: 123 NDT 125
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
N TSD+ S ++T + +S + T N T + DN + T + + +D
Sbjct: 15 NDTTSDNNTTSDNDTTSDNDTTSDNDTTADNNTTSDNDTTADNNTTSDNNTTSDNDTTSD 74
Query: 611 SST 619
+ T
Sbjct: 75 NDT 77
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT--DDKGENDKDNTLEDNEKTKKPSKSI 604
N TSD+ + ++T + +S + T N T D+ +D D T +++ T + S
Sbjct: 291 NDTTSDNDTTTNNDTTSDNDATSDNDTTTNNDTTSDNDATSDNDTTSDNDTTTNNDATSD 350
Query: 605 TDSST 619
D++T
Sbjct: 351 NDTTT 355
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDN-TLEDNEKTKKPSKSIT 607
N T+D+ S +T + +S + T N T E DN T DN+ T K+
Sbjct: 51 NDTTADNNTTSDNNTTSDNDTTSDNDTTSDNDTTSDNETTSDNDTNSDNDTTSDNDKTSD 110
Query: 608 DSST 619
+ +T
Sbjct: 111 NDTT 114
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLN-ITDDKGENDKDNTLEDNEKTKKPSKSIT 607
N TSD+ S ++T + ++ + T N T D +NT N+ T +K+
Sbjct: 159 NETTSDNDTNSDNDTTSDNDKTTDNDTTTDNDTTSDNDTTSDNNTTSYNDTTSDNNKTSN 218
Query: 608 DSST 619
+++T
Sbjct: 219 NNTT 222
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLE-DNEKTKKPSKSITDSS 616
+K T + ++ EN + EK L D+ D+ E NE+TK P SI D++
Sbjct: 741 KKLTQDKDVETENKNNEEKEKLEDDADQDHQSNDSEGEGSNERTKSPISSIIDNT 795
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDS 613
T ++ +K+ KEN +T+ K DK +KD T E+ +KTK+ ++
Sbjct: 478 TKENKDKTKENKDKTKENKDKTKNNKDKTKENKDKTNENKDKTKENKDKTKENKNKTKEN 537
Query: 614 ST 619
T
Sbjct: 538 KT 539
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 458 KSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKK 589
K+ + T ++ ++ K DK +N+KD T E+ +KTK+
Sbjct: 395 KNKKDKTKNNKDKTKENKDKTKENKDKTKNNKDKTKENKDKTKE 438
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK +N+KD T E+ +KT +
Sbjct: 464 TKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKNNKDKTKENKDKTNE 515
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 449 SIEKSTVESTLQKENSSQTEKTVLNITD---DKGENDKDNTLEDNEKTKK 589
S+E+ +++E S+ TV N T DK +N+KD T E+ +KTK+
Sbjct: 369 SVERED-SMAMKEELHSKGTNTVKNKTKNKKDKTKNNKDKTKENKDKTKE 417
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK+
Sbjct: 429 TKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKE 480
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK+
Sbjct: 436 TKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKE 487
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK+
Sbjct: 443 TKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKE 494
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK+
Sbjct: 401 TKNNKDKTKENKDKTKENKDKTKNNKDKTKENKDKTKENKDKTKENKDKTKE 452
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK+
Sbjct: 415 TKENKDKTKNNKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKE 466
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTKK 589
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK+
Sbjct: 422 TKNNKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKE 473
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTE--KTVLNITDDKGENDKDNTLEDNEKTK 586
T ++ +K+ KEN +T+ K DK + +KD T E+ +KTK
Sbjct: 450 TKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTK 500
>SB_47950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 ESTLQKENSSQTEKTVLNITD-DKGENDKDNTLEDNEKTKKPSKSI-TDSS 616
E+ ++K+ + +++L I+D + END E+N K KKP S+ +DSS
Sbjct: 226 ETKIKKKKDKERVESILEISDSESAEND-----ENNSKKKKPKSSLGSDSS 271
>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 97 KFCTCNTDSHNHMVIIRC*ISCN 165
KFC CN+D N RC CN
Sbjct: 401 KFCQCNSDCQNRFPGCRCKAQCN 423
>SB_646| Best HMM Match : MGAT2 (HMM E-Value=2.1)
Length = 298
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 470 ESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWG 625
E+ EN S + N D+ +ND DN DN+ +I+ SS+ G
Sbjct: 230 ENENDNENDSDNDNDNDNDNDNDNDNDNDND-NDNDNDNDNDNTISSSSSGG 280
>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
Length = 309
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 619
SDS K+ ++ + EN + + N DD ++D +N + + + + + +D+ T
Sbjct: 7 SDSDNKNDNDNDIVNENDNDNDSDSDNENDDDNDSDNENDNDSDSDNENDNVNDSDNET 65
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKT 583
N TSD+ + S +T N+S T N N DN DN T
Sbjct: 119 NNKTSDNNKTSDNNNTSDNNNTSDNNNTSDNNNTSDNNNTSDNNNSDNNNT 169
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 619
++S +T +NS + +D+K +D +NT DN KT +K+ +++T
Sbjct: 81 DRSDKNNTSDNKNSDNNNTSDNKNSDNKNISDNNNT-SDNNKTSDNNKTSDNNNT 134
>SB_34536| Best HMM Match : DUF680 (HMM E-Value=2.1)
Length = 331
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 443 SDSIEKSTVE--STLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKK 589
S+ + ST + S + SSQ +T + + +N+KD++++ NE TKK
Sbjct: 222 SEKADVSTADDQSPSRVNESSQDCETDTKASLESAQNEKDHSVDKNETTKK 272
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 575 HYLQVYYPYHFHPYH 531
HY YYPY+ PYH
Sbjct: 938 HYHHPYYPYYHQPYH 952
>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
Length = 1238
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 434 VPTSDSIEKSTVESTLQK---ENSSQTEKTVLNITDDKGEND-KDNTLEDNEKTK 586
V T+ +TV + LQK E Q EK + D+ G+ND KD +E+ +K K
Sbjct: 776 VQTNGDESGNTVSANLQKKVDETYVQKEKKDEDEEDEDGKNDKKDGRVENKKKVK 830
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDK---DNTLEDNEK--TKKPSKSITDSST 619
+ ST +++ +NS+ T N T D +D DN+ DN K P+ S TD+S+
Sbjct: 201 DNSTSDNSTS-DNSNSDNSTSDNSTSDNSNSDNSYTDNSTSDNSKKDNSNPNNSNTDNSS 259
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 488 ENSSQTEKTVLNITDDKGENDK---DNTLEDNEKTKK--PSKSITDSST 619
+NS+ T N + D +D DN+ DN K K P+ S TD+S+
Sbjct: 387 DNSNSDNSTSDNSSSDNSNSDNSYTDNSTSDNSKKDKSNPNNSNTDNSS 435
>SB_54210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 464 TVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTK 586
T+ T Q+++S K+ LNI D G N DN++T+
Sbjct: 191 TILLTRQEKDSEIVYKSKLNIVDLAGSERLSNEKSDNQRTR 231
>SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)
Length = 1079
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 225 KCKNG*TKSKNGICDQTFRRDSSKVSGRGKRNKRK 329
KCK+G K KNG C + ++ K +GK++K +
Sbjct: 902 KCKHG--KRKNGKCRKRPKKGKGKKGKKGKKDKNE 934
>SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 470 ESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE 577
EST +S+ ++ +N +D +GEN++++ +ED E
Sbjct: 886 ESTNDNGSSTDEAESEVNNSDKEGENEENDEVEDME 921
>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTEKTVLNITDD-----KGENDKDNTLEDNEKTKKPSKSIT 607
++S EK E + E S + K V++ DD K ++D DN ++ E P K +
Sbjct: 991 AESEEKEKDEESSDAEAPSSSRKRVISSDDDDELDEKLDDDDDNNDDEEESKPTPKKRVR 1050
Query: 608 DSSTWGE 628
++ E
Sbjct: 1051 QLASSSE 1057
>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
Length = 603
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 518 LNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYAS 637
L+++DD +ND D+ ED+ KK K+ + G+ AS
Sbjct: 246 LDLSDDDDDNDDDDN-EDDNSVKKEKKTGQQNKKKGKSAS 284
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 443 SDSIEKSTVE-STLQK---ENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
+ +++K T E ST+ K ENS+ + T N T DKG + + E+ K +
Sbjct: 874 NSTVDKGTEENSTVDKGAEENSTVDKGTEENSTVDKGAEENSTVDKGTEENSTVDKGAEE 933
Query: 611 SST 619
+ST
Sbjct: 934 NST 936
>SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDK----GENDKDNTLEDNEKTKKPSKSITDSSTW 622
+K T + + NSS+ E+ I DD E ++D E E+ KK + + + T
Sbjct: 67 QKRTDKRQRRGSNSSEDEERQKRIPDDSKEKIEERNEDKATEGKEEEKKDNLAPLQTRT- 125
Query: 623 GEYASYI 643
G+Y Y+
Sbjct: 126 GQYQKYL 132
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,022
Number of Sequences: 59808
Number of extensions: 284088
Number of successful extensions: 1404
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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