Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C11
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-2|AAK68447.2| 439|Caenorhabditis elegans Hypothetical ... 31 0.94
Z22173-1|CAA80125.1| 398|Caenorhabditis elegans Hypothetical pr... 30 1.2
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 30 1.2
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 30 1.2
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 30 1.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 1.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 1.6
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 29 2.9
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 29 2.9
AF043700-8|AAB97574.2| 374|Caenorhabditis elegans Hypothetical ... 29 2.9
U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily as... 29 3.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 29 3.8
AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical ... 29 3.8
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 28 5.0
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 28 5.0
AF040661-7|AAG24223.1| 439|Caenorhabditis elegans Hypothetical ... 28 6.7
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006723-1|AAF59429.3| 534|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein. 27 8.8
>AC025715-2|AAK68447.2| 439|Caenorhabditis elegans Hypothetical
protein Y38F2AR.6 protein.
Length = 439
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 337 YNQIEDTTSVEDINNDKIQNVQDVKTTSQTLECTY 441
+NQIE+ V D N+K++NV + T ++T+ Y
Sbjct: 375 HNQIEENPKVADEFNEKLENVDEDLTRNRTIHDRY 409
>Z22173-1|CAA80125.1| 398|Caenorhabditis elegans Hypothetical
protein C15H7.3 protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 464 TVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGE 628
T T+Q +S Q+E T DD+ + KD+ E+ ++ +K K W E
Sbjct: 57 TSRETIQPSSSGQSEGTTR--MDDQKDEKKDDKKEEKKEERKEEKKEEVKEPWSE 109
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 434 VPTSDSIEKSTVESTL--QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTK 586
+PT +ST++ TL +K +SSQ +KT D E K T+E N+ ++
Sbjct: 203 IPTILEERESTLQKTLTIEKNHSSQLQKTFTVAEDAPEELQKTVTIEKNQSSE 255
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 434 VPTSDSIEKSTVESTL--QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTK 586
+PT +ST++ TL +K +SSQ +KT D E K T+E N+ ++
Sbjct: 203 IPTILEERESTLQKTLTIEKNHSSQLQKTFTVAEDAPEELQKTVTIEKNQSSE 255
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEK 580
EK + +ST +KE + + + LN D+ EN+K+ +E+NE+
Sbjct: 248 EKKSKKSTEKKELNIENLED-LNNEDEDSENEKEEEIEENEE 288
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEK 580
EK + +ST +KE + + + LN D+ EN+K+ +E+NE+
Sbjct: 248 EKKSKKSTEKKELNIENLED-LNNEDEDSENEKEEEIEENEE 288
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKT-VLNITDDKGENDKDNTLEDNEKTKKPSKSITDS 613
+K T++ +K +SS ++K+ VL DD D T + + T+ +K TDS
Sbjct: 12865 KKKTIKKKTEKSDSSISQKSNVLKPADDDKSKSDDVTDKSKKTTEDQTKVATDS 12918
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 437 PTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSIT 607
PT S K +S E + TE+ T +K NDK + +KT KP K +T
Sbjct: 12620 PTDLSKAKKDSKSKKSDEPEASTEE---KSTTEKPTNDKTSKKSAEKKTVKPKKEVT 12673
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKT-VLNITDDKGENDKDNTLEDNEKTKKPSKSITDS 613
+K T++ +K +SS ++K+ VL DD D T + + T+ +K TDS
Sbjct: 12865 KKKTIKKKTEKSDSSISQKSNVLKPADDDKSKSDDVTDKSKKTTEDQTKVATDS 12918
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 437 PTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSIT 607
PT S K +S E + TE+ T +K NDK + +KT KP K +T
Sbjct: 12620 PTDLSKAKKDSKSKKSDEPEASTEE---KSTTEKPTNDKTSKKSAEKKTVKPKKEVT 12673
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE---KTKKPSKSITD 610
T++ ++ T E+T + +++KT T ++ E+D+D ++D+E + ++ S T+
Sbjct: 480 TTEEEKEETTETTEKVTTVGKSKKTKATTTTEEPEDDEDVYVDDDEEGTEEEEEEVSTTE 539
Query: 611 SST 619
ST
Sbjct: 540 KST 542
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE---KTKKPSKSITD 610
T++ ++ T E+T + +++KT T ++ E+D+D ++D+E + ++ S T+
Sbjct: 480 TTEEEKEETTETTEKVTTVGKSKKTKATTTTEEPEDDEDVYVDDDEEGTEEEEEEVSTTE 539
Query: 611 SST 619
ST
Sbjct: 540 KST 542
>AF043700-8|AAB97574.2| 374|Caenorhabditis elegans Hypothetical
protein K09H9.1 protein.
Length = 374
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPS 595
E S V+S+L++E +S EKT + +KG+ +KD + E K+ S
Sbjct: 69 ELSIVDSSLEEEKAS-FEKTQSALLKEKGKIEKDKLMLREEAQKQAS 114
>U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily
assigned gene nameprotein 151 protein.
Length = 785
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 437 PTSDSIEKSTVE-STLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE 577
PT + +E++ E + K SS +L+ DD+ E D D ++D++
Sbjct: 348 PTREELEEADKELRRVPKGTSSYQAAWILDDEDDEDEEDSDEDMDDSD 395
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGE 628
+KS +K S+ K +N D +D+D + +++KK K++ DSS+ E
Sbjct: 259 KKSKKSKKSKKFKKSEKRKRAVN---DSSSDDEDEEEKPEKRSKKSKKAVIDSSSEDE 313
>AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical
protein Y54E10A.12 protein.
Length = 547
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPS 595
E S V+S+L++E +S EKT + +KG+ +KD + E K+ S
Sbjct: 134 ELSIVDSSLKEEKAS-FEKTQSALLKEKGKIEKDKLMLREEAQKQAS 179
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 530 DDKGENDKDNTLEDNEKTKKPSKSITDSSTWG 625
D E+D D+ LED E+ KK K+ +S G
Sbjct: 435 DSPQESDDDSDLEDEEREKKKKKASASASGAG 466
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 530 DDKGENDKDNTLEDNEKTKKPSKSITDSSTWG 625
D E+D D+ LED E+ KK K+ +S G
Sbjct: 435 DSPQESDDDSDLEDEEREKKKKKASASASGAG 466
>AF040661-7|AAG24223.1| 439|Caenorhabditis elegans Hypothetical
protein W10G11.17 protein.
Length = 439
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 485 KENSSQTEKTVLNITDDKGENDKD 556
+E+ ++ +TV+++ D GEND+D
Sbjct: 268 EEDEKKSSETVIDVHQDSGENDED 291
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 610
EK E +KE + EKT DK E + + ++ EK +KP K +T+
Sbjct: 66 EKEAAEK--EKEKEKEKEKTHEKNEADKEEKEAE---KEEEKEEKPPKEVTE 112
>AC006723-1|AAF59429.3| 534|Caenorhabditis elegans Hypothetical
protein Y19D10B.2 protein.
Length = 534
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 334 TYNQIEDTTSVEDINNDKIQNVQDVKTTSQTLECTYFRFHRKIY 465
T ++E S ED+N D I TTS+ L CT+ KI+
Sbjct: 431 TVEEMETLISAEDVNVDGIYGKYCTPTTSENL-CTFPEICPKIF 473
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 343 QIEDTTSVEDINNDKIQNVQDVKTTSQ 423
+IE TSV++++ +N+Q+V TT +
Sbjct: 704 EIEALTSVDEVSTPSTENIQEVHTTKR 730
>Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical
protein F53A2.4 protein.
Length = 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 473 STLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE-KTKKPS 595
+ +KE + + + + D++GE KD +ED + K KP+
Sbjct: 110 AAFEKEQAKNSVENLEKFVDNEGETSKDAEVEDEDSKLMKPN 151
>AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 473 STLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE-KTKKPS 595
+ +KE + + + + D++GE KD +ED + K KP+
Sbjct: 110 AAFEKEQAKNSVENLEKFVDNEGETSKDAEVEDEDSKLMKPN 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,783
Number of Sequences: 27780
Number of extensions: 228333
Number of successful extensions: 971
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -