Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C05
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 119 3e-28
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 29 0.78
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.2
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 4.2
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.2
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 5.5
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 5.5
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 5.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 7.3
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 7.3
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 9.6
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.6
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 119 bits (287), Expect = 3e-28
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 1/201 (0%)
Frame = +3
Query: 57 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 233
+IF I ++A +L +RSL+T+ ASA PPVQ++GL+G YAS+L++AA K LD
Sbjct: 3 HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59
Query: 234 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 413
VEK L + ++ + +++I +P + R K + + P N +L +N
Sbjct: 60 VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119
Query: 414 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 593
RL L + F +M A RGE+ ++ +A PLD LE+ + K G + ++ K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNK 179
Query: 594 VDPSLIGGMVVSIGDKYVDMS 656
V PS+IGG++V IGD +D+S
Sbjct: 180 VTPSIIGGLIVEIGDNILDVS 200
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 509 WFGCNNFTSYFTPVRSHHNLKSINDSLQFPQATI 408
W G +F + F + +H + S+N L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 346 CFNASTFMLLFIVGLMMNSLSF-ASVLID 263
C F+LL GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 451 LKALMTASSFPKRPFSASNPSRLPVVG 371
L +T + P++PFS S+P+ P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 412 PFSASNPSRLPVVGERLILLATCFNASTFML 320
PFS S+LPV G ILL F +T+++
Sbjct: 3 PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 3 RNIWSIKPKV*KILLTCANIFLNKIMSALKGNLLVRSLSTSVASAQM 143
R +WSI K K + +N+ ++ AL NLL S SA++
Sbjct: 739 RGLWSIDSKESKNMHISSNVVASEAPDALAANLLAMYESNPKKSAKV 785
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 165 FGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIK 317
+G E + A K+ D ++KEL +S+K+ A+ I++ I+
Sbjct: 602 YGEEDPDVIVCYIGADDGKSPDQIQKELADLAESVKSSAEASAKIVSEIIQ 652
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 394 PSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASV 272
P + P ++ CF A F+++FI + LSF +V
Sbjct: 188 PLKRPNTSISNVIWLICFGAPLFLVIFICYIFFTVLSFFNV 228
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 333 DALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVAC 488
+AL N+I + T + LGL+ RL + +MA H G + C
Sbjct: 5 EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 173 QSKYLHWRFYHLC*CDTCAQR 111
+ K LHWRF CD C +
Sbjct: 555 ECKSLHWRFSDRSNCDECGHK 575
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 454 ILKALMTASSFPKRPFSASNPSRLPVVGERL 362
+ + L +SS P RPFS NP+ V + L
Sbjct: 47 LTEILNDSSSLPARPFSLPNPNNSTVEKQSL 77
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.6
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 228 DIVEKELCQFQQSIKTDA-KLKEFII--NPTIKRSMKV-DALKHVANKISLSPTTGNLLG 395
D + K++ ++ SI ++ L E I+ +P I +S V DA H+++ +SP NL
Sbjct: 144 DTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQDAEIHISSIYVISPIKKNLPF 203
Query: 396 LLAENGR 416
L+ + GR
Sbjct: 204 LVEDAGR 210
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 84 ALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQ 263
+LK + S+ + A+ VKP ++ E R SAA + DIV + +Q
Sbjct: 272 SLKSTIFFLSIPSLEATPITVKPESEMGDWESRNVWKEVSAALASGNYDIVSSKKSTIEQ 331
Query: 264 SIKTDAKLKE 293
S + D + KE
Sbjct: 332 S-QRDMRKKE 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,618
Number of Sequences: 5004
Number of extensions: 59348
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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