Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C05
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...   113   2e-25
02_05_0759 + 31545473-31546204                                         67   1e-11
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852...    30   1.9  
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     29   4.3  
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778...    29   4.3  
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279...    28   7.5  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    27   9.9  
04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    27   9.9  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score =  113 bits (271), Expect = 2e-25
 Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 2/185 (1%)
 Frame = +3

Query: 108 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 281
           R  ++ VA  + + +K P  ++G  G YASALF  A+K   LD VE E+    ++ K   
Sbjct: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82

Query: 282 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 461
              +FI + ++ +  +V A+  +  +   S  T N L +LA+NGRL  ++ +   F  + 
Sbjct: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142

Query: 462 AAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDK 641
            AH+GEV   V T  PL + + + L+  L+  L  N+T+ +  K+D S++GG+V+  G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202

Query: 642 YVDMS 656
             DMS
Sbjct: 203 VFDMS 207


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +3

Query: 183 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 362
           YA+AL   AS+   L+    +L + ++    +A + EF  NPT+ R  K   +  +A   
Sbjct: 64  YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122

Query: 363 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEA 542
            L     N L ++ +NGR G +  ++  F+    A       EV T   + Q + Q+L  
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE---NAFNSLTGTEVATVTSVVQLESQDLAQ 179

Query: 543 ALKKF--LKGNETVQLTAKVDPSLIGGMVVSI---GDKYVDMS 656
             ++   L G + V++  ++DP LI G  +     G   +DMS
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMS 222


>07_03_1116 -
           24084162-24084201,24084481-24084570,24084640-24085220,
           24085653-24085822,24086006-24087074
          Length = 649

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
 Frame = +3

Query: 171 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 344
           LE  Y S     A K KAL+  + E C+   ++     AK + F+      R   V AL 
Sbjct: 56  LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115

Query: 345 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 512
            V  K  +      L G+L  NG +  K+    N    + A+     A    E   A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170

Query: 513 DQAQRQNLE 539
           D   R  L+
Sbjct: 171 DVKPRPVLK 179


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 466 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 371
           AA+ +L+    A++  +RP +   P RLPV+G
Sbjct: 15  AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46


>03_02_0358 +
           7784067-7784128,7784239-7785040,7785513-7785617,
           7785835-7786194
          Length = 442

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 468 HRGEVACEVV-----TAKPLDQAQR-QNLEAALKKFLKGNETVQLTAKVDPSLIGGM 620
           H G VA  V      T  P+D A R + +E+ L+  L+G      T   DPS  G +
Sbjct: 155 HGGRVAALVFVRDEETGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211


>03_05_0640 -
           26326832-26327166,26327295-26327529,26327665-26327908,
           26328389-26328507,26328860-26329050,26329133-26329220,
           26331653-26331715,26331816-26333944,26334084-26334186
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 249 RVLFPRCQAPWSLMLLKKERKHTDLPIQILALEVLPFVLMRHLCSKSEPADSPLKP 82
           RV  P  +   S    ++ RK + L   +  L ++ F+    +C    P DSP+ P
Sbjct: 317 RVQTPEPEPTASSERARRPRKRSSLRFLVAPLALVVFMAAALICVPPPPVDSPVMP 372


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = +3

Query: 24   PKV*KILLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASA-LF 200
            PK+    +   NIFLN+   AL GN  +  L   + +         V  +   Y SA + 
Sbjct: 1016 PKIIHRDIRAVNIFLNEDFEALVGNFCLAKLEDDMDTDDRTAVRGVVGHIAPEYLSAGIL 1075

Query: 201  SAASKTKALDIVEKELCQFQQSIKTD--AKLKEFIINPTIKRSMKVDALK 344
            S  +      I+  EL   ++++  D  A+ ++  +   +KR +K   LK
Sbjct: 1076 SEKTDVYGYGIMLLELITGKRALYHDGRARDEDIFLLDWVKRLLKEKKLK 1125


>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 414 RLGKLEAVINAFKIMMAAHRGEVACEVVT 500
           +LG +EAV +AF+ M+ AH  +   E+ T
Sbjct: 698 KLGYVEAVEDAFRCMVEAHPNQPTLEIET 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,078,607
Number of Sequences: 37544
Number of extensions: 374932
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)