Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C05
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)                 130   1e-30
SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)                 35   0.051
SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_254| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05)                   31   0.83 
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    30   1.4  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             30   1.4  
SB_153| Best HMM Match : Pox_TAA1 (HMM E-Value=5)                      29   3.3  
SB_6680| Best HMM Match : Astacin (HMM E-Value=0)                      29   4.4  
SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_40689| Best HMM Match : DUF558 (HMM E-Value=1.3e-14)                28   7.7  
SB_36344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)
          Length = 154

 Score =  130 bits (314), Expect = 1e-30
 Identities = 66/148 (44%), Positives = 95/148 (64%)
 Frame = +3

Query: 63  FLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEK 242
           FL K  S L  N    SLS++ ++A+ VKPP+Q+FG+EGRYA A++SAA+K+K L+ VE 
Sbjct: 9   FLQK--SPLLNNARQLSLSSTRSAAEFVKPPIQIFGIEGRYAHAVYSAAAKSKQLETVES 66

Query: 243 ELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLG 422
           EL   +  +K   +L +FI+NPT+ ++ K   L  +      S  T NLL  +AEN RLG
Sbjct: 67  ELKNLESMMKKSERLSDFIVNPTMNKTKKQSGLTQLLKDQKFSDLTINLLSAMAENNRLG 126

Query: 423 KLEAVINAFKIMMAAHRGEVACEVVTAK 506
            + +V NAF  +M+A RGE+ C V +AK
Sbjct: 127 YINSVANAFSKIMSAARGEIICSVTSAK 154


>SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)
          Length = 598

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 27/93 (29%), Positives = 45/93 (48%)
 Frame = +3

Query: 321 SMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVT 500
           SM++   K  ANK +++   GN+  + AE+G   + E V +   + +A +  +  CE+V+
Sbjct: 383 SMELRIAKKFANKTAMAYAYGNIANVHAESGNFAQAE-VNHEQHLKLAKNLNDRVCELVS 441

Query: 501 AKPLDQAQRQNLEAALKKFLKGNETVQLTAKVD 599
            K      R  L+    K L   ET    AKV+
Sbjct: 442 IKQFGDMHR--LKCDYSKALDYYETHLSLAKVN 472


>SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 231 IVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAE 407
           I+EKE  + +   +  +   EF     I+R ++V + KH A K       G++  ++ E
Sbjct: 89  IIEKETVELEDKKENKSTTSEFTSELKIQRRVRVGSCKHPAKKADFETVFGDVANIIPE 147


>SB_254| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05)
          Length = 276

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 400 SNPSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASVLIDC 260
           SN  RL    ER I +A C   + F+L F   +++++++     ++C
Sbjct: 147 SNACRLAYQRERNITIAVCIILAVFLLTFFPAVLLSTVTVICTAVEC 193


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 132 SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVE 239
           SA + KPP Q  GL+ R+ SA F+AA     LD+ +
Sbjct: 460 SAAVTKPPAQTAGLQ-RHESAGFNAADILSNLDVTQ 494


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = +3

Query: 345 HVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQ 524
           HV +++ + P++GNL+  L EN +L  L  V+N+        R      V    P + A 
Sbjct: 113 HVIDRV-IFPSSGNLMSYLNENPQLSMLYEVLNS--------RNMTLSNVTLFAPSNAAL 163

Query: 525 RQNLEAALKKFLKGNETVQL 584
           +      L K LK  + +QL
Sbjct: 164 QSLPPGRLDKLLKNKQCLQL 183


>SB_153| Best HMM Match : Pox_TAA1 (HMM E-Value=5)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 243 ELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLA-ENGRL 419
           +L     +I+TD K   ++++  I      D + HVA   +  P  G++   LA E    
Sbjct: 7   DLIALDVNIQTDGKTSSYVLSNHINCMYSTDDINHVAYDNNQRPLRGDIRSFLAFEEEAK 66

Query: 420 GKLEAV 437
             LE V
Sbjct: 67  NALEGV 72


>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 637

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 192 ALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLS 371
           A+ +  ++ K L   E E   F +  + D+K + F  NP     MK+  +KH   + SLS
Sbjct: 14  AVLAGLAQGKPLQSSEDENA-FDKITQVDSKYEGFTSNPDYDGDMKLPPVKHSRTRRSLS 72


>SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 42  LLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTK 221
           L+TC +I+           L V  LS+S+ ++  VKP V      GR    L+ A S  K
Sbjct: 153 LVTCGSIYHGVCQLRDLNTLSVTELSSSITASSNVKPAVGFIAPGGR-DEVLYFATSWRK 211

Query: 222 A 224
           A
Sbjct: 212 A 212


>SB_40689| Best HMM Match : DUF558 (HMM E-Value=1.3e-14)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 204 LKKERKHTDLPIQILALEVLPFVLMRHLC 118
           L+  R + DLP+   +++VLP +   HLC
Sbjct: 18  LRIPRIYVDLPLSTQSVQVLPDMAFHHLC 46


>SB_36344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 474 GEVACEVVTAKPLDQAQRQNLEAALKKF----LKGNETVQLTAKVDPSLIGGMVVSIGDK 641
           GE++  V TA  LD+   QNL+     F        E+ ++ +  D + + G  + +  K
Sbjct: 13  GELSASVSTAAVLDEVSSQNLKRTFTLFSEALTSSKESYEVMSANDENTL-GFTIDLYSK 71

Query: 642 YVD 650
           Y+D
Sbjct: 72  YMD 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,856,620
Number of Sequences: 59808
Number of extensions: 425774
Number of successful extensions: 1068
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)