Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C05
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial...   119   1e-27
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA...    36   0.024
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro...    32   0.39 
At1g69540.1 68414.m07996 MADS-box family protein contains Pfam p...    31   0.89 
At1g61240.2 68414.m06901 expressed protein contains Pfam profile...    31   0.89 
At1g61240.1 68414.m06900 expressed protein contains Pfam profile...    31   0.89 
At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At5g61340.1 68418.m07697 expressed protein                             28   4.8  
At1g17870.1 68414.m02211 expressed protein contains 6 transmembr...    28   4.8  
At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to autop...    27   8.3  
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop...    27   8.3  

>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
           putative / H(+)-transporting two-sector ATPase, delta
           (OSCP) subunit, putative identical to SP|Q96251; similar
           to SP|P22778 ATP synthase delta chain, mitochondrial
           precursor (EC 3.6.3.14) (Oligomycin sensitivity
           conferral protein) (OSCP) {Ipomoea batatas}; contains
           Pfam profile PF00213: ATP synthase F1, delta subunit
          Length = 238

 Score =  119 bits (287), Expect = 1e-27
 Identities = 64/197 (32%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
 Frame = +3

Query: 78  MSALKGNLLVRSLST-SVASAQM---VKPPVQVFGLEGRYASALFSAASKTKALDIVEKE 245
           +S+++   L  +L T + ASAQ    VK P+ + G  G +AS L+ AA K  +L+ +E +
Sbjct: 21  VSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETD 80

Query: 246 LCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGK 425
           L +  +++KT     +F  +P++ R  ++ A++   ++   +  T N L LLAENG+L  
Sbjct: 81  LSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKN 140

Query: 426 LEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPS 605
           L+A++  F  +  AHRG+V   V T  PL  A+ + L   L++ +   + + +  K+DPS
Sbjct: 141 LDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPS 200

Query: 606 LIGGMVVSIGDKYVDMS 656
           + GG++V    K +DMS
Sbjct: 201 IYGGLIVEFQQKVLDMS 217


>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
           identical to HDA18 [Arabidopsis thaliana] GI:21105769;
           similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
           sapiens}; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 682

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
 Frame = +3

Query: 72  KIMSALKGNLLVRSLS-TSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKEL 248
           KI+ AL+G   + SL  +S+A  Q++    Q+ G     +S  +   S  + +  V + L
Sbjct: 355 KIVLALEGGYNLESLGKSSLACVQVLLEDKQIHG-----SSETYPLESTRRVIQAVRERL 409

Query: 249 CQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVAN-KISLSPTTGNLLG----LLAENG 413
           C +  S+       E + NP+ +R+     L+ V   K  ++   G L      L A+N 
Sbjct: 410 CTYWPSLDASMASNENLKNPSAERNSADALLREVEELKSLMAARDGELEARRKELKAKNK 469

Query: 414 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALK 551
            L   E  + A  +M+   R +V C  + AK ++  Q++  EA  K
Sbjct: 470 ELEANEKELEA-GLMLIRAREDVICG-LHAK-IESLQQERDEAVAK 512


>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
           protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
           zinc finger-containing protein ZIGA3 GI:10441352 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 483

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 26/105 (24%), Positives = 47/105 (44%)
 Frame = +3

Query: 327 KVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAK 506
           KVD    + N +S+  +T N           G   A  N++    +A  G+ A ++VTAK
Sbjct: 225 KVDFATDLFNMLSMDDSTTN-----TSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAK 279

Query: 507 PLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDK 641
           P + +      +  +   K  +T  LT +  P  + G ++S+ +K
Sbjct: 280 PAESSSPPASSSDFEDLFK--DTPNLTTQQAPKDVKGDIMSLFEK 322


>At1g69540.1 68414.m07996 MADS-box family protein contains Pfam
           profile: PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 378

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 474 GEVACEVVTAKPLDQAQR--QNLEAALKKFLKGNETVQLTAKVD 599
           GEV  +     P ++A+R  +NLEA  K F+K N  + ++  +D
Sbjct: 64  GEVIAKFAQLSPQERAKRKLENLEALRKTFMKANHDIDISKFLD 107


>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 425

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 474 GEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQL 584
           GE+    + A P+   Q+ N++A +KKFL  N TV L
Sbjct: 109 GELTNRNLLAMPVGLKQKDNVDAVVKKFLPANFTVIL 145


>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 425

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 474 GEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQL 584
           GE+    + A P+   Q+ N++A +KKFL  N TV L
Sbjct: 109 GELTNRNLLAMPVGLKQKDNVDAVVKKFLPANFTVIL 145


>At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 743

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = -2

Query: 328 FMLLFIVGLMMNSLSFASVLIDC*NWQSSFSTMSSALVFDAAEKRAEAYRPSNPNTCTGG 149
           F  +  + L  N L+  ++LI    + SSFS  S+  VFD   K   +      N    G
Sbjct: 154 FQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNG 213

Query: 148 FTI---CADATLVLKERTSRFPFKADIILFKNI 59
           + +     DA  +L+   S F    D + +  I
Sbjct: 214 YCLEGKLEDALGMLERMVSEFKVNPDNVTYNTI 246


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = -2

Query: 340 NASTFMLLFIVGLMMNSLSFASVLIDC*NWQSSFSTMSSALVFDAAEKRAEAYRP----S 173
           NAS F L F+    + +  F+S      N+ + F ++SSA+++      A         S
Sbjct: 141 NASAFALFFLAYNTLEAFGFSSR-----NFYT-FLSLSSAIIYSIIIANAFVISNLALVS 194

Query: 172 NPNTCTGGFTICADATLVLKERTS 101
           +P++ +GG+T    A L+++ R S
Sbjct: 195 SPSSSSGGYTNILKACLLIRGRNS 218


>At1g17870.1 68414.m02211 expressed protein contains 6 transmembrane
           domains; similar to predicted metalloproteases
          Length = 573

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 237 EKELCQFQQSIKTDAKLKEFIINPTIKRSMKVD 335
           EK+  Q +   KTD + K+F+ NP+I+ ++K++
Sbjct: 96  EKKSKQQEMDWKTDEEFKKFMGNPSIEAAIKLE 128


>At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 422

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 329 LHASFYCRVDDEFLELCISFDRLLKLAE 246
           L   FYCR  D+F + C+   R LKLAE
Sbjct: 358 LALGFYCRDKDDFDDFCL---RALKLAE 382


>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 467

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 329 LHASFYCRVDDEFLELCISFDRLLKLAE 246
           L   FYCR  D+F + C+   R LKLAE
Sbjct: 403 LALGFYCRDKDDFDDFCL---RALKLAE 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,546
Number of Sequences: 28952
Number of extensions: 308885
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)