Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B19
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 146 1e-35
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 145 3e-35
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 145 3e-35
At4g17840.1 68417.m02661 expressed protein 29 2.0
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 8.2
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 27 8.2
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At1g07490.1 68414.m00802 expressed protein 27 8.2
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 146 bits (353), Expect = 1e-35
Identities = 71/108 (65%), Positives = 81/108 (75%)
Frame = +2
Query: 329 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 508
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
Query: 509 FKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 652
FKFPGRQKI VS+KWGFTK+ R +F KLR+E R+ DG ++ HG
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHG 204
Score = 138 bits (334), Expect = 3e-33
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 219 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFP--RLSASIKCYHALEL-------IG 371
SSEALEA RI CNKY+ K K + PF R++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 372 SRLGCVVRLASLRVL*HVFALDS 440
LG R+A +VL V D+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA 143
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 145 bits (351), Expect = 3e-35
Identities = 70/108 (64%), Positives = 79/108 (73%)
Frame = +2
Query: 329 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 508
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAK 156
Query: 509 FKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 652
FKFPGRQKI VS+KWGFTK+ R E+ KLR R+ DG ++ HG
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHG 204
Score = 138 bits (334), Expect = 3e-33
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 219 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFP--RLSASIKCYHALEL-------IG 371
SSEALEA RI CNKY+ K K + PF R++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 372 SRLGCVVRLASLRVL*HVFALDS 440
LG R+A +VL V D+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN 143
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 145 bits (351), Expect = 3e-35
Identities = 70/108 (64%), Positives = 81/108 (75%)
Frame = +2
Query: 329 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 508
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
Query: 509 FKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 652
FKFPGRQKI VS+KWGFTK+ R ++ KLR+E R+ DG ++ HG
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHG 204
Score = 138 bits (333), Expect = 4e-33
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 219 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFP--RLSASIKCYHALEL-------IG 371
SSEALEA RI CNKY+ K K + PF R++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 372 SRLGCVVRLASLRVL*HVFALDS 440
LG R+A +VL V D+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA 143
>At4g17840.1 68417.m02661 expressed protein
Length = 422
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 438 SPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 611
S S C+ +GG SS+L P+ S D+K+ + +R+ +++ LRS +K ++S
Sbjct: 19 SSSSWCSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 147 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 40
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 258 KYLXKELRKGSVPYPHETSPFPRLSASIKCYHAL 359
KYL E KG PYPH+ + + I+ Y +L
Sbjct: 96 KYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSL 129
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 429 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 557
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 429 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 557
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 483 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 584
SS C+VPSSSS + RS+ ++ S + SL
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,034
Number of Sequences: 28952
Number of extensions: 357171
Number of successful extensions: 1087
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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