BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B18
(656 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5CXK3 Cluster: Conserved protein with 6 transmembrane ... 38 0.21
UniRef50_A2EUB1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.49
UniRef50_Q94546 Cluster: Another transcription unit protein; n=4... 37 0.49
UniRef50_A5D6S7 Cluster: LOC553494 protein; n=4; Danio rerio|Rep... 35 1.5
UniRef50_A5TTQ6 Cluster: Ligand gated channel protein TonB; n=3;... 34 2.6
UniRef50_A2DJM6 Cluster: Leucine Rich Repeat family protein; n=1... 34 2.6
UniRef50_Q6KC79 Cluster: Nipped-B-like protein; n=75; Deuterosto... 34 2.6
UniRef50_UPI0000519E71 Cluster: PREDICTED: similar to CG17665-PA... 34 3.5
UniRef50_A0BYA3 Cluster: Chromosome undetermined scaffold_136, w... 34 3.5
UniRef50_UPI0000E47903 Cluster: PREDICTED: similar to Tetratrico... 33 4.6
UniRef50_A0EE47 Cluster: Chromosome undetermined scaffold_91, wh... 33 4.6
UniRef50_Q4SS19 Cluster: Chromosome undetermined SCAF14482, whol... 33 6.0
UniRef50_Q17Q38 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A2DAD3 Cluster: TKL family protein kinase; n=1; Trichom... 33 6.0
UniRef50_Q7S8M9 Cluster: Putative uncharacterized protein NCU065... 33 6.0
UniRef50_Q6CTX2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 33 6.0
UniRef50_UPI0000D5612C Cluster: PREDICTED: similar to Probable D... 33 8.0
UniRef50_UPI000023E56E Cluster: hypothetical protein FG09415.1; ... 33 8.0
UniRef50_Q4S019 Cluster: Chromosome 18 SCAF14786, whole genome s... 33 8.0
UniRef50_A6Q487 Cluster: Cytochrome c biogenesis protein, CcmF/C... 33 8.0
UniRef50_A4GI38 Cluster: Phytoene/squalene synthetase; n=2; Bact... 33 8.0
UniRef50_Q7PTK1 Cluster: ENSANGP00000006278; n=1; Anopheles gamb... 33 8.0
UniRef50_Q4N867 Cluster: TashAT2 protein, putative; n=2; Theiler... 33 8.0
UniRef50_A2DCR9 Cluster: Leucine Rich Repeat family protein; n=1... 33 8.0
UniRef50_A5E500 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
>UniRef50_Q5CXK3 Cluster: Conserved protein with 6 transmembrane
domain; n=4; Cryptosporidium|Rep: Conserved protein with
6 transmembrane domain - Cryptosporidium parvum Iowa II
Length = 990
Score = 37.9 bits (84), Expect = 0.21
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 388 MVPRKSSKKGIHLENKKRERQITPSPEL-KKASSDEEEVISLPTKRKRIRLNPVDSDDSD 564
++ + G ENK TP+P L KK S+D+E + P+ RK +RL P + D D
Sbjct: 123 IITKAKQTPGGSTENKYNTSNATPTPLLVKKISTDKEVNSAQPSPRKSLRLQPDYNKDED 182
Query: 565 VENK 576
+ +
Sbjct: 183 LNER 186
>UniRef50_A2EUB1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1112
Score = 36.7 bits (81), Expect = 0.49
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 427 ENKKRERQITPSPELKKASSDEE-EVISLPTKRKRIRLNPVDSDDSDVENKADNK 588
EN +E ++P+ E +K S D+E E + + P +S+++++EN ADN+
Sbjct: 569 ENLSKEETVSPNSENRKTSQDKEKENTNFDNQNNHNGNKPKESENNEIENPADNQ 623
>UniRef50_Q94546 Cluster: Another transcription unit protein; n=4;
Endopterygota|Rep: Another transcription unit protein -
Drosophila melanogaster (Fruit fly)
Length = 725
Score = 36.7 bits (81), Expect = 0.49
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 433 KKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSD-DSDVENKA 579
KK+ R+ + S + KK S + ++ PTK K+ RL DSD + DV KA
Sbjct: 249 KKKARKASGSDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKA 298
>UniRef50_A5D6S7 Cluster: LOC553494 protein; n=4; Danio rerio|Rep:
LOC553494 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 981
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 340 QRIKN*KRTLLKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTK 519
+R+ + L + + PR+S++K ++ Q PS ++ K +S + T
Sbjct: 525 RRVTRSGKQLQDCQVPVTPRRSTRKTDTEQHTSENHQDMPSEKVSKPASPARKTPQKATP 584
Query: 520 RK---RIRLNPVDSDDSDVENKADNKIGTT 600
RK + R VD DD D + D+K T
Sbjct: 585 RKGSRKTRSTAVDDDDGDDNDDDDDKAALT 614
>UniRef50_A5TTQ6 Cluster: Ligand gated channel protein TonB; n=3;
Fusobacterium nucleatum|Rep: Ligand gated channel
protein TonB - Fusobacterium nucleatum subsp.
polymorphum ATCC 10953
Length = 262
Score = 34.3 bits (75), Expect = 2.6
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Frame = +1
Query: 307 ILFSTILLKHRQRIKN*KRTLLKIPIVMVPRKSSKK--GIHLENKKRERQI--TPSPELK 474
ILF +++ Q +K+ + + +PI V +++S G L+ ++RE+Q +P P+++
Sbjct: 15 ILFGFGIIQTTQMVKDEPKNQI-VPIAFVAKQTSDNPGGKVLDTQEREKQSPESPKPKVE 73
Query: 475 KASSD---EEEVISLPTKRKRIRLNPVDSDDSDVENKAD 582
K + EE+ + ++K I N D VE K +
Sbjct: 74 KKPEEKKLEEKKVEKKPEKKEIESNIPSKDAKPVEKKPE 112
>UniRef50_A2DJM6 Cluster: Leucine Rich Repeat family protein; n=1;
Trichomonas vaginalis G3|Rep: Leucine Rich Repeat family
protein - Trichomonas vaginalis G3
Length = 1112
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 397 RKSSKKGIHLENKKRERQITPSPELK---KASSDEEEVISLPTKRKRIRLNPVDSDDSDV 567
+K+SK+ + L + + E PS K K S E++ P+KRK+ L+ + DD
Sbjct: 951 KKNSKRKLQLSDSEEEEVKKPSKRKKPVVKDSESEDDEPKKPSKRKKPILSDSEDDDEIP 1010
Query: 568 ENKADN 585
+ K+ N
Sbjct: 1011 QKKSSN 1016
>UniRef50_Q6KC79 Cluster: Nipped-B-like protein; n=75;
Deuterostomia|Rep: Nipped-B-like protein - Homo sapiens
(Human)
Length = 2804
Score = 34.3 bits (75), Expect = 2.6
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +1
Query: 424 LENKKRERQITPSPELKKASSDEEEVISLPTK-RKRIRLNPVDSDDSD 564
+++K++ER+ +PS E SSD EE +S P K RKR+ + DSD D
Sbjct: 2473 VKDKRKERKSSPSKE--NESSDSEEEVSRPRKSRKRVD-SDSDSDSED 2517
>UniRef50_UPI0000519E71 Cluster: PREDICTED: similar to CG17665-PA.3
isoform 1; n=3; Endopterygota|Rep: PREDICTED: similar to
CG17665-PA.3 isoform 1 - Apis mellifera
Length = 1035
Score = 33.9 bits (74), Expect = 3.5
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 409 KKGIHLENKKRERQITPSPELKK-ASSDEEEVISLPTKRKRIRLNPVDSD 555
K G + + ++ P L +SS+EEE++++ +KR ++NPV SD
Sbjct: 984 KTGANTRERSSSKRPLPRYHLDSTSSSEEEEIVNVKQAKKRKKINPVGSD 1033
>UniRef50_A0BYA3 Cluster: Chromosome undetermined scaffold_136,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_136,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 166
Score = 33.9 bits (74), Expect = 3.5
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 400 KSSKKGIHLENKKRERQITPSPELKKASSDEEEVISL---PTKRKRIRLNPV--DSDDSD 564
K+S HL+N ++Q E K +E+++ + P+K + N +DDSD
Sbjct: 8 KASSSVGHLKNLNNDKQFYSEEETSKKEEEEKQLKKVSKPPSKMSQFSKNATGYQTDDSD 67
Query: 565 VENKADNKIG 594
E +NK+G
Sbjct: 68 KETPRNNKVG 77
>UniRef50_UPI0000E47903 Cluster: PREDICTED: similar to
Tetratricopeptide repeat domain 4; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Tetratricopeptide repeat domain 4 - Strongylocentrotus
purpuratus
Length = 364
Score = 33.5 bits (73), Expect = 4.6
Identities = 17/60 (28%), Positives = 36/60 (60%)
Frame = +1
Query: 400 KSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKA 579
+S+K + +KR++Q+ E K+ +++E+ + +L T+ R +PVD +D D + +A
Sbjct: 199 QSAKLKKSADKEKRKKQLE---EKKQRAAEEKLIAALKTRNLRFLSDPVDGEDGDPDEQA 255
>UniRef50_A0EE47 Cluster: Chromosome undetermined scaffold_91, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_91,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 699
Score = 33.5 bits (73), Expect = 4.6
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 431 TKNAKGKLHPHRSLRRLRVMKKKLFHCQLREKE*D*IQSILMILMLKIKQTIKLEQ 598
TKN K+ + R+ +MKKK+ C K+ Q IL+I++L ++ I+L+Q
Sbjct: 479 TKNKVSKIFIVTNYGRIEIMKKKIMDCYKFLKK---FQKILIIIILNLQTEIELKQ 531
>UniRef50_Q4SS19 Cluster: Chromosome undetermined SCAF14482, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14482,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1919
Score = 33.1 bits (72), Expect = 6.0
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +1
Query: 382 IVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDS 561
I+ V R + + HL+ ++++RQ + S + +SS +E S ++R+R + DS
Sbjct: 93 ILAVQRSAMLRKQHLQQQQQQRQTSKSGSDEDSSSSDESDSSSSSRRRRNSSDSGSGSDS 152
Query: 562 DVENKADN 585
D + +D+
Sbjct: 153 DSSSGSDS 160
>UniRef50_Q17Q38 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 977
Score = 33.1 bits (72), Expect = 6.0
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = +1
Query: 448 QITPSPELKKASSDEE-----EVISLPTKRKRIRLNPVDSDDSDVENKAD 582
++T + +L ASSDEE E KRKR +LN D ++S++E++AD
Sbjct: 585 EVTTNGKLVIASSDEENLQQDEEEKTKKKRKRRKLNISDDEESEMESEAD 634
>UniRef50_A2DAD3 Cluster: TKL family protein kinase; n=1;
Trichomonas vaginalis G3|Rep: TKL family protein kinase
- Trichomonas vaginalis G3
Length = 658
Score = 33.1 bits (72), Expect = 6.0
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Frame = +1
Query: 379 PIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDE------EEVISLPTKRKRIRLN 540
P+V+ P+ ++K+ + +N K+ TPS + K SD+ EE+ + K+K+ ++N
Sbjct: 573 PVVIKPKNANKRILTRKNSKQINTDTPSVDAKPQISDQNDDEILEELDDIQEKKKQTKVN 632
Query: 541 PVDSDDSD---VENKADNK 588
D ++ V +K D K
Sbjct: 633 EEDEAVNEIVTVPSKKDRK 651
>UniRef50_Q7S8M9 Cluster: Putative uncharacterized protein NCU06585.1;
n=1; Neurospora crassa|Rep: Putative uncharacterized
protein NCU06585.1 - Neurospora crassa
Length = 1040
Score = 33.1 bits (72), Expect = 6.0
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 415 GIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKADNKI 591
G E KK ++ P+ K A++ + S+P R+R R N S+D D E D+++
Sbjct: 974 GDQAERKKESAVMSTKPKRKAAAAKAKA--SIPGSRRRTRRNVPSSEDEDEEEDEDSEL 1030
>UniRef50_Q6CTX2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome C of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 1184
Score = 33.1 bits (72), Expect = 6.0
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 385 VMVPRK-SSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNP--VDSD 555
V P K +S + I L+ +++TPSP ++ + ++ PT+ K+ ++P ++
Sbjct: 719 VSQPAKVTSSRLITLKPVDTPKEVTPSPSMQLHDKIDRQLSPSPTRNKKDYISPEFIEDS 778
Query: 556 DSDVENK 576
D D EN+
Sbjct: 779 DGDAENE 785
>UniRef50_UPI0000D5612C Cluster: PREDICTED: similar to Probable DNA
mismatch repair protein MSH6; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Probable DNA
mismatch repair protein MSH6 - Tribolium castaneum
Length = 1079
Score = 32.7 bits (71), Expect = 8.0
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 276 MSKRNSTGAANTLFNYFTKTPPTNKK 353
MSKR STG +NTL NYF +N K
Sbjct: 1 MSKRFSTGQSNTLLNYFQSPKSSNGK 26
>UniRef50_UPI000023E56E Cluster: hypothetical protein FG09415.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG09415.1 - Gibberella zeae PH-1
Length = 824
Score = 32.7 bits (71), Expect = 8.0
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 358 KRTLLKIPIVMVPRKSSKKGIHLENKKRERQITPSP--ELKKASSDEEEVISLPTKRKRI 531
+R L +PI VP KS ++ E ER +P P + SSD+E S+P + + I
Sbjct: 175 RRRLSSLPITSVPDKSLEQTAQPELSPEERSPSPGPAEDSSPTSSDDE---SIPAQSRII 231
Query: 532 RLNP 543
R P
Sbjct: 232 RRPP 235
>UniRef50_Q4S019 Cluster: Chromosome 18 SCAF14786, whole genome
shotgun sequence; n=2; Percomorpha|Rep: Chromosome 18
SCAF14786, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 1447
Score = 32.7 bits (71), Expect = 8.0
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 331 KHRQRIKN*KRTLLKIPIVMVPRKSSKKGIHLENKKRERQIT 456
K+RQ +K +RT L +P V++P K + I ++ + +E +T
Sbjct: 717 KYRQVVKVGRRTTLSVPFVVIPTKEGQFSIDVKAETKESVLT 758
>UniRef50_A6Q487 Cluster: Cytochrome c biogenesis protein,
CcmF/CycK/CcsA family; n=1; Nitratiruptor sp.
SB155-2|Rep: Cytochrome c biogenesis protein,
CcmF/CycK/CcsA family - Nitratiruptor sp. (strain
SB155-2)
Length = 1044
Score = 32.7 bits (71), Expect = 8.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 249 LRLLY*IFIFTYYRAKVYFLMIYHLTFIFILLSQKST 139
L LLY IF F +R + +F ++HL F+ I++ T
Sbjct: 60 LNLLYNIFKFRLFRKEKFFTGLFHLAFLIIIIGAAVT 96
>UniRef50_A4GI38 Cluster: Phytoene/squalene synthetase; n=2;
Bacteria|Rep: Phytoene/squalene synthetase - uncultured
marine bacterium EB0_41B09
Length = 284
Score = 32.7 bits (71), Expect = 8.0
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 427 ENKKRERQITPSPELKKASSDEEEVISLPT--KRKRIRLNPVD 549
E+ +R R P ELKK S EEE+ISL K K++ N VD
Sbjct: 167 EDARRGRIYIPLDELKKLSVSEEEIISLKNSDKIKKLVQNQVD 209
>UniRef50_Q7PTK1 Cluster: ENSANGP00000006278; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000006278 - Anopheles gambiae
str. PEST
Length = 495
Score = 32.7 bits (71), Expect = 8.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 418 IHLENKKRERQIT--PSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKADNKI 591
I E K++ QI+ + EL AS D + P + R+ N D DD + EN
Sbjct: 83 IEAEQKRKLNQISYPNTDELSSASDDNDADGERPARAARMIANGSDEDDYEEENDESAPS 142
Query: 592 GTT 600
GTT
Sbjct: 143 GTT 145
>UniRef50_Q4N867 Cluster: TashAT2 protein, putative; n=2;
Theileria|Rep: TashAT2 protein, putative - Theileria
parva
Length = 338
Score = 32.7 bits (71), Expect = 8.0
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 286 ETAQGQPILFSTILLKHRQRIKN*KRTLLKIPIVMVPRKSSK--KGIHLENK-KRERQIT 456
+T Q + FSTI + +I K IP + R+ SK + HL K KR + +T
Sbjct: 122 KTCQEKIQSFSTIQKYNPSKIYQPKTEEYPIPQMRKTRQKSKTERSKHLRGKHKRRKYVT 181
Query: 457 PSPELKKASSDEEEVI 504
P E + SS+ EE++
Sbjct: 182 PLNEDTETSSETEEIL 197
>UniRef50_A2DCR9 Cluster: Leucine Rich Repeat family protein; n=1;
Trichomonas vaginalis G3|Rep: Leucine Rich Repeat family
protein - Trichomonas vaginalis G3
Length = 1082
Score = 32.7 bits (71), Expect = 8.0
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 379 PIVMVPRKSSKKGIHLENKKRERQITPSPELKKA---SSDEEEVISLPTKRKRIRLNPVD 549
P + P K KK KK+ ++ P+ KK SD ++ + LP K+K++ + +D
Sbjct: 879 PPMKKPSKRPKKEQEPVKKKKLQEEEILPKKKKRIINDSDSDDEVILPKKKKQV-IKDLD 937
Query: 550 SDDSDV 567
SD+ D+
Sbjct: 938 SDEEDI 943
>UniRef50_A5E500 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 756
Score = 32.7 bits (71), Expect = 8.0
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Frame = +1
Query: 301 QPILFSTILLKHRQRIKN*KRTL--LKIPIVMVPRKSSKKGIHLENKKRE---RQITPSP 465
Q ILF+ IL ++ K TL LK P P K ++ +K +TP
Sbjct: 303 QNILFNRILTNQLDQVPRNKVTLASLKRPATTSPEKRKRRKYEKVDKLHFFSLGDVTPVQ 362
Query: 466 ELKKASSDEEEVISLPTKRKRIRLNPVDSDD-SDVENKADNK 588
+ K DEEE+ + K K + N +D+++ +++ K + K
Sbjct: 363 SIPKEKDDEEEIENEREKAKE-KGNEMDAEEGKEIKEKENGK 403
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,264,386
Number of Sequences: 1657284
Number of extensions: 9357180
Number of successful extensions: 31304
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31120
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -