Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B18
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 31 0.19
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 30 0.26
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 30 0.34
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.78
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 29 0.78
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 27 2.4
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 27 2.4
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 27 3.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 3.1
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 7.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 7.3
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 7.3
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.3
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 7.3
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 7.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 9.6
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 25 9.6
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +1
Query: 397 RKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENK 576
+ S H EN K IT + +D P + ++ PV + + +V +
Sbjct: 562 KSKSSSSKHKENDKASVSITTTTTPSITPADPVPTSPKPLAIEPVKRKPVHAGNLEVTSV 621
Query: 577 ADNKIGTT 600
+DNK+G T
Sbjct: 622 SDNKLGAT 629
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 30.3 bits (65), Expect = 0.26
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 261 IQIITMSKRNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCNGSPKKQ 407
I +I+ R ST ++ FN P +N LK+DA E+TD + P K+
Sbjct: 511 IPLISTFTRLSTRKSSNDFNSSNSRPSSNA-LKSDANENTDSSLPPSKK 558
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 358 KRTLLKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRL 537
K TL++ V+VP + +H E+ K + +ITP K + E S+ + +
Sbjct: 64 KHTLVQ---VVVPGVDHRTKLHSESSKNDSEITPDINRSKVNPQEYSEFSVASPQTISPS 120
Query: 538 NPVDSDDSDV 567
P++ DD V
Sbjct: 121 LPLNLDDETV 130
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.7 bits (61), Expect = 0.78
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 258 HIQIITMSKRNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCNGSPK-KQ*KRNTS*KQ 434
HIQ S + G FT+ P + K+ K E+T SPK K K + K+
Sbjct: 477 HIQKYASSLTGAKGGQLKRQTIFTQGPNSTKESKQAVKEETSVKNSPKGKNTKNGKAEKE 536
Query: 435 KTRK 446
K K
Sbjct: 537 KPGK 540
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 28.7 bits (61), Expect = 0.78
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 242 KRRYDSYSNYNNVETKQHRGSQYS 313
+R YDSYS+Y+ +E ++ YS
Sbjct: 216 RRHYDSYSSYDELERRRSSNESYS 239
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 389 WFPEKAVKKEYILKTKNAKGKLHPHRSLRRLRVMKKKLFHCQLR 520
W+P + +I+ HR+L RL+ KK +F LR
Sbjct: 163 WYPGARKLRRHIIMHVGPTNSGKTHRALERLKTCKKGIFAGPLR 206
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +1
Query: 487 DEEEVISLPTK----RKRIRLNPVDSDDSDVEN 573
DEEE+++ + RKR R N SDD +VEN
Sbjct: 102 DEEEILAKKREEQKLRKRSRQNDDGSDDDEVEN 134
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 442 ERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSD 564
E ++ S + +SS EE++ +P +R N ++S+D D
Sbjct: 470 ELHLSDSESSETSSSSEEDMEFIPFSARRDSANTINSEDFD 510
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 236 YNKRRYD----SYSNYNNVETKQHRGSQYSFQLFY*NTANE*KIKSGRY*RY 379
YNKR D Y Y++ KQHR +YS +Y + K +S R RY
Sbjct: 315 YNKRDRDPDRTKYREYHSERRKQHRTDRYSDD-YYQGRSYSYKKRSHRSDRY 365
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 379 PIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVI-SLPTKRKRIRLNPVDSD 555
P+V+ P+K + LE K+ +++ + K +DEE + +L + + +IR N D D
Sbjct: 320 PVVVRPKKRNILTEELEKYKKSKKVVLG-KRKNLENDEESTLRALSSFQSKIR-NAEDED 377
Query: 556 DSD 564
D
Sbjct: 378 VMD 380
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 397 RKS-SKKGIHLENKKRERQITPSPELKKASSDEE 495
RKS K + + K ER+ +PSP+++ DEE
Sbjct: 161 RKSVEKSSVPNKKHKAERKRSPSPKIEILEDDEE 194
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 421 HLENKKRERQITPSPELKKASSDEEEV-ISLPTKRKRI---RLNPVDSDDSDVENKADNK 588
H +N+ E+ + +PEL K + EE+ +S + + LN + DD D +A N+
Sbjct: 435 HSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMDGYKEAFNE 494
Query: 589 I 591
+
Sbjct: 495 L 495
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 377 YRL*WFPEKAVKKEYILKTKNA 442
Y L W P K + +E ILK K++
Sbjct: 194 YALSWLPAKTLAREAILKAKDS 215
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 388 MVPRKSSKKGIHLENKKRERQITPSPELKKASSD 489
MVP+K KK N+K R+ P+ + A D
Sbjct: 101 MVPQKPKKKKRSRRNRKASRKKIPATQSSSADMD 134
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 406 SKKGIHLENKKRERQITPSPELKKASSDEEE 498
S + ++N++ + TPSP ++ SDE+E
Sbjct: 300 SLRSSKMDNRRSKYADTPSPRRSRSYSDEDE 330
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +1
Query: 391 VPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVE 570
+ ++SSK + + K+E + SPE K S +++ +K+K + +S+ S E
Sbjct: 40 IAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQK----KSKKKEESSSESESESSSSE 95
Query: 571 NKADN 585
+++ +
Sbjct: 96 SESSS 100
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 463 PELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKADNKI 591
PE K E L K KR++L V SDV+N+ KI
Sbjct: 86 PEFSKTLKKHLEAYELALKEKRLKLPNV----SDVDNRKKAKI 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,723
Number of Sequences: 5004
Number of extensions: 43421
Number of successful extensions: 158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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