Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B18
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 32 0.35
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 32 0.35
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 1.9
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 29 3.3
09_06_0082 + 20749425-20749589,20750137-20750238,20750320-207503... 29 4.3
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 29 4.3
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787... 29 4.3
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 29 4.3
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 28 7.5
>06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 511 PTKRKRIRLNPVDSDDSDVENKADNKIGTT 600
P R+R R +P SDDSD++ + DN T+
Sbjct: 915 PPSRRRARRSPSSSDDSDIDGQEDNLHATS 944
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 367 LLKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEE 495
LLK+ I P S K +ENK + T SP K SS E+
Sbjct: 1589 LLKVSIKKTPEPSISKDAQVENKSLHMKATDSPGKNKTSSTEK 1631
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 442 ERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVEN 573
E + L S +E ++L TK+ +++L+ V++ ++D+EN
Sbjct: 757 EAALLAMTNLNSESQEEVNRLTLETKKLKVKLSEVENSNTDLEN 800
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 385 VMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSD 564
+ P+ + +KG + ++KR+R TP KK D++ I+ KR + D D+ D
Sbjct: 408 IPTPKANIRKGSN--SRKRKRGSTPKSSSKKFDDDDD--ITPSKKRNKALEYDTDEDEDD 463
Query: 565 VE-NKADNK 588
+ K+D++
Sbjct: 464 ADPMKSDSE 472
>09_06_0082 +
20749425-20749589,20750137-20750238,20750320-20750384,
20750471-20750588,20750937-20751012,20751304-20751365,
20751457-20751588,20751686-20751739,20751969-20752034,
20752115-20752189,20752271-20752321
Length = 321
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 409 KKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKAD 582
+K +++ K E + +L+K +EEE+ K++R+R +P S ++EN +D
Sbjct: 88 EKRVNIRTKIEEEE---KEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSD 142
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 236 YNKRRYDSYSNYNNVETK--QHRGSQYSFQLFY 328
Y+ +YDS ++ +++ K QH GS+ S +LFY
Sbjct: 179 YHSGQYDSEEHFMDLDKKLKQHEGSRVSNRLFY 211
>04_03_0498 +
16574250-16574312,16576576-16577457,16578624-16578714,
16578802-16578857,16579527-16579640
Length = 401
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 330 KTPPTNKKLKADATEDTDCNGSPKKQ*KRNTS*KQKTRKANYTLT 464
+T P K + + C G+P+ KR + K+ R+A+Y T
Sbjct: 261 ETVPNEDKTPCTSLDVRGCEGTPRASLKRRVNKKRTKREASYPTT 305
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 472 KKASSDEEEVISLPTKRKRIRLNPVDSDDSDVEN 573
K SD EE + P KRKR++L+P D+ + +E+
Sbjct: 253 KDPVSDIEETLP-PKKRKRMKLDPYDTSNKRLED 285
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 273 TMSKRNSTGAANTLFNYFTKTPPTNKKLKADATEDTDCN 389
T ++ + G N +F ++T TPP + +DT C+
Sbjct: 134 TTARGLTRGGKNIVFTFWTATPPRASFFTLHSPDDTKCS 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,979
Number of Sequences: 37544
Number of extensions: 221784
Number of successful extensions: 639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -