Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B18
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 30 1.4
SB_24251| Best HMM Match : ubiquitin (HMM E-Value=0.1) 30 1.9
SB_21821| Best HMM Match : MRG (HMM E-Value=0) 29 2.5
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 4.4
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 5.8
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_43574| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4) 28 7.7
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 28 7.7
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6) 28 7.7
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +1
Query: 385 VMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLP------TKRKRIRLNPV 546
+ VPR+SS H+E+ R I+P E + +S E+ + P TK+K +
Sbjct: 771 IEVPRRSS----HMEDSSANRSISPVKE-RASSKPSEKAMEAPSGKAPDTKQKERKKTDS 825
Query: 547 DSDDSDVENKADN 585
DSDD D +++D+
Sbjct: 826 DSDD-DESSESDS 837
>SB_24251| Best HMM Match : ubiquitin (HMM E-Value=0.1)
Length = 275
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 388 MVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVI--SLPTKRKRIRLNPVDSDDS 561
M + + G++L+ +KR + +L S D + + S+PT + I ++ DSDDS
Sbjct: 1 MSRKTGPRSGVNLQAEKRRKVEESDDDLDLFSFDNQIPLTFSVPTSQTAISID--DSDDS 58
Query: 562 DVE 570
DV+
Sbjct: 59 DVD 61
>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
Length = 292
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 400 KSSKKGIHLENKKRERQITPSPELKKAS-SDEE----EVISLPTKRKRIRLNPVDSDDSD 564
K + + + + RE+ + KK SD E E ++ PT+RKR RLN +D +
Sbjct: 60 KYNDANLQKQRELREQNLKSKKARKKQEKSDSEKTKLEEVAGPTRRKRTRLNNTLDNDEN 119
Query: 565 VENKADNKI 591
+ D KI
Sbjct: 120 YVPRVDVKI 128
>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 309 TLFNYFTKTPPTNKKLKADATEDTDCNGSPKKQ*KRNTS*KQ-KT-RKAN 452
TLF+YFTK P NK A +T+ SPK + K + K+ KT KAN
Sbjct: 3 TLFSYFTKV-PANKSPNAGDRPETNGKTSPKGKAKTPETKKEVKTSTKAN 51
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 433 KKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKADNK 588
K R R + SP KKA S + SL +KR +P+ +S+ + + ++
Sbjct: 369 KSRSRSHSNSPSRKKARSKKSRSRSLSKSKKRRSRSPITKKESNSKRHSHSR 420
>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 394 PRKSSKKGIHLENKKRERQITPSPE-LKKASSDEEEVISLPTKRKRIRLNPVDSD 555
PR++ + KR R+ T E ++K+ + E+V PT+ +R+R +P +S+
Sbjct: 267 PREAERGRESPRESKRVREGTREAERVRKSPKESEKVREGPTESERVRESPRESE 321
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 300 AANTLFNYFTKTPPTNKKLKADATEDTDCNGSPKKQ*KRNTS*KQKTRKAN 452
++ T N ++TPP ++K++AD + + SP KR + ++++ N
Sbjct: 2066 SSRTSSNRDSRTPPADEKIRADINSN-EVQSSPSPSTKREEARRERSNARN 2115
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +1
Query: 331 KHRQRIKN*KRTLLKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISL 510
+ R+R K +L K+ +V K G KK + + TP PE++K ++ E ++
Sbjct: 475 RDRKRGKE-SESLSKVAVVKPKEKRDCSG-----KKDQSETTPDPEIQK-QNEVESLVLT 527
Query: 511 PTKRKRIRLNPVDSDDSD 564
+RK+ VD + +
Sbjct: 528 ELERKQFNTEVVDVESEE 545
>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 936
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 160 NENESQMVYHKKVNFCPVISKNKNLIQQ 243
N+ +SQ+V K NF PV ++++NLIQQ
Sbjct: 72 NKRKSQIV---KENFWPVTARSRNLIQQ 96
>SB_43574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 231 IFIFTYYRAKVYFLMI--YHLTFIFILLSQKST*VKIILITEHY 106
I + Y + ++I YH+T I IL++ + IILI H+
Sbjct: 16 IILIAPYHITIIIILIASYHITIIIILIASYHITIIIILIASHH 59
>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
Length = 220
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 397 RKSSKKGIHLENKKRERQITPSPEL-KKASSDEEEVISLPTKRKRIRLNPVDSDDSDVEN 573
RK +K+ L KK+ + + E +K D + + L KRK + + ++D+D +N
Sbjct: 152 RKLNKR---LRQKKKNKNVANGEENERKVKGDNKGLKKLKKKRKGGKNQKMPNEDADSKN 208
Query: 574 KADNKI 591
A N +
Sbjct: 209 IASNSL 214
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/42 (21%), Positives = 26/42 (61%)
Frame = +1
Query: 376 IPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEV 501
+P+V P + ++ + +++++ +Q+T S ++ A + +EV
Sbjct: 679 VPLVRTPSEDQERATNADSQQQWKQVTTSSDVNNALDELDEV 720
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 394 PRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKR 528
P +S ++ L +K+R P P++ S DE E S P+ R++
Sbjct: 626 PARSPRRK-SLRHKRRSISQRPCPDIVDDSDDESETTSRPSSRQQ 669
>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
Length = 642
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 394 PRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKR 528
P +S ++ L +K+R P P++ S DE E S P+ R++
Sbjct: 481 PARSPRRK-SLRHKRRSISQRPCPDIVDDSDDESETTSRPSSRQQ 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,515
Number of Sequences: 59808
Number of extensions: 295971
Number of successful extensions: 1175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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