Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B16
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843... 32 0.35
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 29 3.3
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 29 4.3
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 29 4.3
01_03_0225 + 13960843-13962417 29 4.3
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 28 7.5
04_04_0253 - 23944279-23944358,23944634-23944711,23945118-239452... 28 7.5
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 27 9.9
07_03_0140 + 14238645-14238849,14239081-14239163 27 9.9
>10_05_0034 +
8431753-8431790,8431940-8432063,8432726-8433038,
8433189-8433251,8433778-8434058
Length = 272
Score = 32.3 bits (70), Expect = 0.35
Identities = 26/94 (27%), Positives = 41/94 (43%)
Frame = +3
Query: 18 NAPPTLPVSLLVSCETNFKIKTFTTMLREKSSCENRHSTEQDRRQLPSNRLPPIEELTLG 197
++P TL + +L T+ I L+ KS + ST QD + PSN P +
Sbjct: 119 SSPSTLDLLILDKHGTSLAIPPSKRDLKLKS----KRSTHQDSKGHPSNTDPGPSRIINR 174
Query: 198 LKQKLHLQARARAAPYYIRKQEPVDLVERLLEQR 299
K A + Y K+ P+D +E+L+ R
Sbjct: 175 RVTKSESSANTQLLVQYFSKRYPIDHLEQLMTGR 208
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 385 KHSICESVEHVVKSLVCMKRVGLQWCYMRRACEKRMAICD 504
+H+ C S + + V L+W + RAC R ICD
Sbjct: 91 RHAFCHGPAFPTLSKILLGHVALKWLHQIRAC-ARKEICD 129
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/45 (22%), Positives = 27/45 (60%)
Frame = +3
Query: 183 ELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAEA 317
E+ +GL+++ H+ +A ++ L+++L+EQ++ A++
Sbjct: 93 EIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSAEAKS 137
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 EQDRRQLPSNRLPPIEELTLGLKQKLHLQARARAAPYYIRKQEPVDLVE---RLLEQRAL 305
+++ + +PS P + + ++ H+ + A + ++ + + L+E R + +++
Sbjct: 674 KENAKYIPSTSKGPCKSMH---EKSAHIASECSAFYFVSQQSQSISLLEETDRQIREKSC 730
Query: 306 VAEAVRRLKEKKQPCHEISVD 368
+ E VRRLKE + HE VD
Sbjct: 731 M-EQVRRLKEARNSYHEELVD 750
>01_03_0225 + 13960843-13962417
Length = 524
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 552 RAAILVRSRDSCRARHVTDSHPFLARSPHIAP 457
RAAI V SR+ V H F +R P IAP
Sbjct: 83 RAAIFVSSREVTHRALVQRGHTFASRPPAIAP 114
>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +3
Query: 99 REKSSCENRHSTEQDRRQLPS-NRLPPIE-ELTLGLKQKLHLQARARAAPYYIRKQEPVD 272
+E ++ H E R L + N + E L G K + + P +KQ P
Sbjct: 965 KEVKVTQSLHDRESKGRILGNQNEIHKSEVNLDKGWKPSNIVTSMTSFIPLVKQKQRPTT 1024
Query: 273 L-VERLLEQRAL-VAEAVRRLKEKKQ 344
+ V+R + +AL VAEAV+R ++KKQ
Sbjct: 1025 VCVKRDVRVKALEVAEAVKRREQKKQ 1050
>04_04_0253 -
23944279-23944358,23944634-23944711,23945118-23945235,
23945496-23945594,23946615-23947418
Length = 392
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 169 NLLEGNCLLSCSVLWRFSQLDFSLSIVVKVL-ILKFVSHETRRLTGNVGGALRLR 8
+ L+G+C LSC L R +L ++ + +++ +L +S+ + L G A + R
Sbjct: 277 HFLDGDCYLSCEKLQRQLKLQLAVQLKIELKNMLPRISYSSYALFGGCSEATKSR 331
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 402 KCGTCCEIACVYETCRITMVLYAESVREKD 491
K G+ AC C + MVLY ++E++
Sbjct: 366 KLGSASASACADAECHVAMVLYCPLIKERE 395
>07_03_0140 + 14238645-14238849,14239081-14239163
Length = 95
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 343 CFFSFNLRTASATRARCSNNLSTRSTGSCFLM**GAARALACR*SFCFRPRVSSSI 176
C +L SAT A+C +S+R+ CF C+ + CF ++ S+
Sbjct: 14 CLVILSLTVDSATAAQCGCCISSRAKACCFGCIAAGGSDSVCKNTCCFPCILADSV 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,226
Number of Sequences: 37544
Number of extensions: 314743
Number of successful extensions: 900
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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